missing dependencies

nfdi4health · Dec 8, 2024 · 602fb02 · 602fb02
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commit 602fb02
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Showing 2 changed files with 11 additions and 3 deletions.
diff --git a/.github/workflows/dpe-reconstruct.yml b/.github/workflows/dpe-reconstruct.yml
@@ -25,7 +25,7 @@ jobs:
       # Step 3: Install dependencies)
       - name: Install R packages
         run: |
-          Rscript -e "install.packages('dplyr')"
+          Rscript -e "install.packages(c('dplyr', 'readxl', 'writexl', 'here', repos='https://cloud.r-project.org/')"
 
       # Step 4: Run the code to update the document
       - name: Run update script

diff --git a/create_mock_data/reconstructing_dpes.R b/create_mock_data/reconstructing_dpes.R
@@ -1,3 +1,13 @@
+
+# Load necessary libraries
+library(dplyr)
+library(readxl)
+library(writexl)
+library(here)
+
+# Your code that uses these libraries
+
+
 ##### Creating DPE_P1 and DPE_P2
 dpe_tracy <- readxl::read_excel(here::here("Tracy/DPE_KARMEN_TRACY.xlsx"), sheet = 1)
 dpe_ines <- readxl::read_excel(here::here("Ines/DPE_KARMEN_INES.xlsx"), sheet = 1)
@@ -9,8 +19,6 @@ dataschema_p1 <- list(Variables =  tibble::tibble(readxl::read_excel(here::here(
 dataschema_p2 <- list(Variables =  tibble::tibble(readxl::read_excel(here::here("rmonize/data_schema/", "Dataschema_P2.xlsx"), sheet = 1)),
                       Categories = tibble::tibble(readxl::read_excel(here::here("rmonize/data_schema/", "Dataschema_P2.xlsx"), sheet = 2)))
 
-library(dplyr)
-
 # Assuming these are data.frames
 combined_data <- bind_rows(dpe_tracy, dpe_ines, dpe_franzi)