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[wip] filter genes by list of genes in the portal #77

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This PR uses the new list of IDs to filter this gene inputs. This is very important because before there were are a handful of genes that are not in the portal that were perviously causing the upload command to crash. This is why #75 is so important.

Now, instead of an error, you get a warning message:

WARNING: requested input id ENSG00000204616 not found in ref_id_list
WARNING: requested input id ENSG00000262302 not found in ref_id_list
...

working for 2 scripts.. need to add the others

@raynamharris raynamharris mentioned this pull request Oct 25, 2022
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raynamharris commented Oct 25, 2022

stats generated using make log and cat logs/chunks.txt on this branch and the retrieve-ids branch

new length
output_pieces_gene/01-appyter/
19962

old length:
output_pieces_gene/01-appyter/
19971

this catches 9 genes without pages in the portal

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