Fix midas patch as given here snayfach/MIDAS#113

npavlovikj · Jun 16, 2021 · 68eca0e · 68eca0e
1 parent d52ac1a
commit 68eca0e
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diff --git a/recipes/midas/meta.yaml b/recipes/midas/meta.yaml
@@ -1,20 +1,21 @@
-{% set name = "midas" %}
+{% set name = "MIDAS" %}
 {% set version = "1.3.2" %}
 {% set sha256 = "87621eaa5b51eb81edc87e3e6b86c7efd3e1d64f503c6abca246b1be79120859" %}
 
 package:
-  name: '{{name}}'
+  name: '{{name|lower}}'
   version: '{{version}}'
 
 source:
   url: https://github.com/snayfach/MIDAS/archive/v{{version}}.tar.gz
   sha256: '{{sha256}}'
   patches:
-    - midas.patch
+    # the working patch comes from https://github.com/snayfach/MIDAS/pull/113
+    - midas.patches
 
 build:
   noarch: python
-  number: 4
+  number: 0
   script: {{ PYTHON }} -m pip install . --ignore-installed --no-deps -vv
 
 requirements:
@@ -45,6 +46,10 @@ test:
 about:
   home: https://github.com/snayfach/MIDAS
   license: GPL-3.0
+  license_family: GPL
+  license_file: LICENSE
   summary: An integrated pipeline for estimating strain-level genomic variation from
     metagenomic data
-  license_family: GPL
+
+extra:
+  notes: MIDAS requires reference database that needs to be additionally downloaded and set, https://github.com/snayfach/MIDAS/blob/master/docs/ref_db.md.
diff --git a/recipes/midas/midas.patch b/recipes/midas/midas.patch