Fixed GO obsoletion errors

obophenotype · Oct 17, 2024 · 4ecc67b · 4ecc67b
1 parent 490fdc9
commit 4ecc67b
Show file tree

Hide file tree

Showing 2 changed files with 6 additions and 6 deletions.
diff --git a/src/patterns/data/default/entity_attribute.tsv b/src/patterns/data/default/entity_attribute.tsv
@@ -1820,7 +1820,7 @@ OBA:0002870		UBERON:0010747	body of ilium	PATO:0000117	size
 OBA:0002871		UBERON:0014444	pubic ramus	PATO:0000117	size			
 OBA:0002872		UBERON:0002355	pelvic region of trunk	PATO:0000117	size			
 OBA:0002873		UBERON:0010890	pelvic complex muscle	PATO:0000117	size			
-OBA:0002874		GO:0005746	mitochondrial respiratory chain	PATO:0000161	rate			
+OBA:0002874		GO:0098803	respiratory chain complex	PATO:0000161	rate			
 OBA:0002875		UBERON:0002377	muscle of neck	PATO:0000117	size			
 OBA:0002876		UBERON:0001103	diaphragm	PATO:0000070	amount			
 OBA:0002877		UBERON:0001497	muscle of pelvic girdle	PATO:0000117	size			
@@ -2218,7 +2218,7 @@ OBA:0003273		UBERON:0001042	chordate pharynx	PATO:0000025	composition
 OBA:0003275		CL:0000233	platelet	PATO:0002083	altered number of			
 OBA:0003277		CL:0000233	platelet	PATO:0000918	volume			
 OBA:0003278		UBERON:0003635	pedal digit 5	PATO:0000122	length			
-OBA:0003279		GO:0005753	mitochondrial proton-transporting ATP synthase complex	PATO:0000161	rate			
+OBA:0003279		GO:0045259	proton-transporting ATP synthase complex	PATO:0000161	rate			
 OBA:0003280		UBERON:0003631	pedal digit 1	PATO:0002181	displaced			
 OBA:0003281		UBERON:0003868	proximal phalanx of pes	PATO:0000122	length			
 OBA:0003282		UBERON:0007709	superior cerebellar peduncle of pons	PATO:0000122	length			
@@ -3923,7 +3923,7 @@ OBA:0006012		UBERON:0003924	ventral pancreatic bud	PATO:0000117	size
 OBA:0006013		UBERON:0003923	dorsal pancreatic bud	PATO:0000117	size			
 OBA:0006014		GO:0050174	phenylalanine decarboxylase activity	PATO:0000161	rate			
 OBA:0006015		GO:0004104	cholinesterase activity	PATO:0000161	rate			
-OBA:0006016		GO:0070547	L-tyrosine aminotransferase activity	PATO:0000161	rate			
+OBA:0006016		GO:0004838	L-tyrosine-2-oxoglutarate transaminase activity	PATO:0000161	rate			
 OBA:0006017		GO:0004656	procollagen-proline 4-dioxygenase activity	PATO:0000161	rate			
 OBA:0006018		GO:0008119	thiopurine S-methyltransferase activity	PATO:0000161	rate			
 OBA:0006019		GO:0004511	tyrosine 3-monooxygenase activity	PATO:0000161	rate			

diff --git a/src/patterns/data/default/entity_attribute_part_of.tsv b/src/patterns/data/default/entity_attribute_part_of.tsv
@@ -2461,7 +2461,7 @@ OBA:1000197		NBO:0000444	eye movement	PATO:0000001	quality
 OBA:1000198		UBERON:0003723	vestibular nerve	PATO:0000001	quality
 OBA:1000199		PR:000017364	von Willebrand factor	PATO:0000001	quality
 OBA:1000200		UBERON:0001653	facial vein	PATO:0000001	quality
-OBA:1000201		GO:0005746	mitochondrial respiratory chain	PATO:0000001	quality
+OBA:1000201		GO:0098803	respiratory chain complex PATO:0000001	quality
 OBA:1000202		UBERON:0001867	cartilage of external ear	PATO:0000001	quality
 OBA:1000203		UBERON:0001714	cranial ganglion	PATO:0000001	quality
 OBA:1000204		UBERON:0004330	proximal phalanx of manual digit 4	PATO:0000001	quality
@@ -2927,7 +2927,7 @@ OBA:1000676		GO:1903709	uterine gland development	PATO:0000001	quality
 OBA:1000677		UBERON:0001839	bony labyrinth	PATO:0000001	quality
 OBA:1000678		NBO:0000001	body part movement	PATO:0000001	quality
 OBA:1000679		NBO:0001915	cocaine consumption	PATO:0000001	quality
-OBA:1000680		GO:0033878	hormone-sensitive lipase activity	PATO:0000001	quality
+OBA:1000680		GO:0120516	diacylglycerol lipase activity	PATO:0000001	quality
 OBA:1000681		NBO:0000570	head bobbing	PATO:0000001	quality
 OBA:1000682		UBERON:0005367	hippocampus granule cell layer	PATO:0000001	quality
 OBA:1000683		GO:0045136	development of secondary sexual characteristics	PATO:0000001	quality
@@ -3088,7 +3088,7 @@ OBA:1000842		UBERON:0001849	membranous labyrinth	PATO:0000001	quality
 OBA:1000843		GO:0001501	skeletal system development	PATO:0000001	quality
 OBA:1000844		CL:0000653	glomerular visceral epithelial cell	PATO:0000001	quality
 OBA:1000845		NBO:0000210	avoidance learning behavior	PATO:0000001	quality
-OBA:1000847		GO:0070547	L-tyrosine aminotransferase activity	PATO:0000001	quality
+OBA:1000847		GO:0004838	L-tyrosine-2-oxoglutarate transaminase activity	PATO:0000001	quality
 OBA:1000848		GO:0072134	nephrogenic mesenchyme morphogenesis	PATO:0000001	quality
 OBA:1000849		GO:0004465	lipoprotein lipase activity	PATO:0000001	quality
 OBA:1000850		GO:0060659	nipple sheath formation	PATO:0000001	quality