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Gp 4415.detailed case format #55

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merged 9 commits into from
Oct 11, 2024
Merged

Gp 4415.detailed case format #55

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a3b648f
add new (detailed) case format and post endpoint
grapigeau Oct 1, 2024
d16b89e
add new (detailed) case format and post endpoint
grapigeau Oct 1, 2024
7b43b82
add new (detailed) case format and post endpoint
grapigeau Oct 1, 2024
0a8df4e
fixups
grapigeau Oct 1, 2024
bde6663
exclude sequencings without limdids
grapigeau Oct 3, 2024
2e852b9
ensure all sequencings with no limids are not shown
grapigeau Oct 3, 2024
9e2ff4e
filter out cases with no sequencing
grapigeau Oct 9, 2024
fa8ca4b
filter for empty cases not as function
grapigeau Oct 11, 2024
2432b60
fix filter for cases without sequencing
grapigeau Oct 11, 2024
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1 change: 1 addition & 0 deletions cardea-server/src/main/java/ca/on/oicr/gsi/cardea/server/service/CaseService.java
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Original file line number Diff line number Diff line change
Expand Up @@ -127,6 +127,7 @@ public Set<ShesmuCase> getShesmuCases() {

public Set<ShesmuDetailedCase> getShesmuDetailedCases() {
return caseData.getCases().stream()
.filter(kase -> !getSequencingForShesmuCase(kase).isEmpty())
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.map(kase -> convertCaseToShesmuDetailedCase(kase))
.collect(Collectors.toSet());
}
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