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Add a OMERO.table visualisation example #2357

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merged 4 commits into from
Nov 21, 2024
Merged

Add a OMERO.table visualisation example #2357

merged 4 commits into from
Nov 21, 2024

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fmeyenhofer
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@fmeyenhofer fmeyenhofer commented Nov 5, 2023 •
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  • New section with the mechanisms and screenshot
  • Link to the python examples.

As discussed with @will-moore in
https://forum.image.sc/t/omero-tables-display-on-images-link-questions/87870

The updated code examples in #2355 are part of this same issue.

This is the second, revised pull-request replacing #2354.

@fmeyenhofer
Add a OMERO.table visualisation example
2650d55 
- New section with the mechanisms and screenshot
- Link to the python examples.
@fmeyenhofer fmeyenhofer mentioned this pull request Nov 5, 2023
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will-moore
will-moore reviewed Nov 9, 2023
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omero/developers/Tables.rst Outdated
|- Image 2 <- (Table panel > link, row values)
|- ...

The rows of the table will be rendered for each image of the dataset. The screenshot bellow shows the right-hand side panel of a selected Image in OMERO.web.
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typo: "below".
Also nicer to use "Image" and "Dataset" instead of "image" and "dataset". Same with sentence above.

@fmeyenhofer
Update Tables.rst
8e2fb15 
Use capitals for Image and Dataset
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Just reading the built pages at https://omero--2357.org.readthedocs.build/en/2357/developers/Tables.html
This says you have to attach the Table to a Dataset, but you can also attach it to a Project, Screen or Plate that contains the Images.

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Yes, I was thinking about this in the context of OMERO.parade.
@Rdornier wrote about in his wiki https://wiki-biop.epfl.ch/en/data-management/omero/parade. He mentions possible conflicts about OMERO.tables in OMERO.parade (but this is another topic).

I did not mention the screen-plate-well use case - since I do not have any experience with that yet only just became aware of it.

This should definitely be mentioned.

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Nice wiki pages on OMERO.parade and other OMERO usage!
@fmeyenhofer So you're going to mention that this works with Project, Screen & Plate?

@fmeyenhofer
Mention all data objects in the OMERO.table visualisation example
afaf2e5 
- Mention Prject, Screen, Plate and well objects.
- Add link to the Screen Plate Well data model
- Add link to OMERO.parade
- Refine text
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Done

will-moore
will-moore approved these changes Nov 23, 2023
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Looks good, thanks

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@fmeyenhofer could I ask you to please read and fill-out a CLA form as described at https://ome-contributing.readthedocs.io/en/latest/cla.html - We need this before we can accept contributions to this repo. Many thanks

@jburel jburel merged commit 1628cc8 into ome:develop Nov 21, 2024
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@fmeyenhofer @will-moore @jburel