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openproblems-bio / task_batch_integration Public

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Remove grouping bottleneck (#42) #73

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Remove grouping bottleneck (#42)

Remove grouping bottleneck (#42) #73

Summary
Jobs
- Build target branch
  
  Build (embed_cell_types_jittered, control_methods, executable, docker, src/control_methods/embed_...
  
  Build (embed_cell_types, control_methods, executable, docker, src/control_methods/embed_cell_type...
  
  Build (no_integration, control_methods, executable, docker, src/control_methods/no_integration/co...
  
  Build (shuffle_integration_by_batch, control_methods, executable, docker, src/control_methods/shu...
  
  Build (shuffle_integration, control_methods, executable, docker, src/control_methods/shuffle_inte...
  
  Build (shuffle_integration_by_cell_type, control_methods, executable, docker, src/control_methods...
  
  Build (no_integration_batch, control_methods, executable, docker, src/control_methods/no_integrat...
  
  Build (isolated_label_asw, metrics, executable, docker, src/metrics/isolated_label_asw/config.vsh...
  
  Build (isolated_label_f1, metrics, executable, docker, src/metrics/isolated_label_f1/config.vsh.y...
  
  Build (clustering_overlap, metrics, executable, docker, src/metrics/clustering_overlap/config.vsh...
  
  Build (asw_batch, metrics, executable, docker, src/metrics/asw_batch/config.vsh.yaml, target/exec...
  
  Build (graph_connectivity, metrics, executable, docker, src/metrics/graph_connectivity/config.vsh...
  
  Build (kbet, metrics, executable, docker, src/metrics/kbet/config.vsh.yaml, target/executable/met...
  
  Build (pcr, metrics, executable, docker, src/metrics/pcr/config.vsh.yaml, target/executable/metri...
  
  Build (cell_cycle_conservation, metrics, executable, docker, src/metrics/cell_cycle_conservation/...
  
  Build (hvg_overlap, metrics, executable, docker, src/metrics/hvg_overlap/config.vsh.yaml, target/...
  
  Build (asw_label, metrics, executable, docker, src/metrics/asw_label/config.vsh.yaml, target/exec...
  
  Build (lisi, metrics, executable, docker, src/metrics/lisi/config.vsh.yaml, target/executable/met...
  
  Build (transform, data_processors, executable, docker, src/data_processors/transform/config.vsh.y...
  
  Build (precompute_clustering_run, data_processors, executable, docker, src/data_processors/precom...
  
  Build (precompute_clustering_merge, data_processors, executable, docker, src/data_processors/prec...
  
  Build (process_dataset, data_processors, executable, docker, src/data_processors/process_dataset/...
  
  Build (scanvi, methods, executable, docker, src/methods/scanvi/config.vsh.yaml, target/executable...
  
  Build (batchelor_fastmnn, methods, executable, docker, src/methods/batchelor_fastmnn/config.vsh.y...
  
  Build (mnnpy, methods, executable, docker, src/methods/mnnpy/config.vsh.yaml, target/executable/m...
  
  Build (scalex, methods, executable, docker, src/methods/scalex/config.vsh.yaml, target/executable...
  
  Build (uce, methods, executable, docker, src/methods/uce/config.vsh.yaml, target/executable/metho...
  
  Build (scprint, methods, executable, docker, src/methods/scprint/config.vsh.yaml, target/executab...
  
  Build (scgpt_finetuned, methods, executable, docker, src/methods/scgpt_finetuned/config.vsh.yaml,...
  
  Build (harmonypy, methods, executable, docker, src/methods/harmonypy/config.vsh.yaml, target/exec...
  
  Build (scgpt_zeroshot, methods, executable, docker, src/methods/scgpt_zeroshot/config.vsh.yaml, t...
  
  Build (liger, methods, executable, docker, src/methods/liger/config.vsh.yaml, target/executable/m...
  
  Build (batchelor_mnn_correct, methods, executable, docker, src/methods/batchelor_mnn_correct/conf...
  
  Build (scimilarity, methods, executable, docker, src/methods/scimilarity/config.vsh.yaml, target/...
  
  Build (pyliger, methods, executable, docker, src/methods/pyliger/config.vsh.yaml, target/executab...
  
  Build (bbknn, methods, executable, docker, src/methods/bbknn/config.vsh.yaml, target/executable/m...
  
  Build (scvi, methods, executable, docker, src/methods/scvi/config.vsh.yaml, target/executable/met...
  
  Build (combat, methods, executable, docker, src/methods/combat/config.vsh.yaml, target/executable...
  
  Build (geneformer, methods, executable, docker, src/methods/geneformer/config.vsh.yaml, target/ex...
  
  Build (scanorama, methods, executable, docker, src/methods/scanorama/config.vsh.yaml, target/exec...
  
  Build (harmony, methods, executable, docker, src/methods/harmony/config.vsh.yaml, target/executab...
Run details
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- Workflow file

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1 warning

ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636

build / Build (graph_connectivity, metrics, executable, docker, src/metrics/graph_connectivity/config.vsh...

succeeded Jan 21, 2025 in 1m 11s

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