Increase time resources #27
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rcannood
reviewed
Jan 14, 2025
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Hard to say but 4 hours isn't a lot of time for biggish datasets. I'm pretty sure at lease scanorama should work. I think it will help for at least some of them. |
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Alright, makes sense. If we bump the time limits for some components, I think we should bump it for all methods to ensure that the different methods get a level playing field when new datasets get added |
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So I should set |
I'd sure the same time label across all methods -- it's a bit unfair if we don't |
rcannood
approved these changes
Jan 17, 2025
lazappi
added a commit
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Jan 27, 2025
* origin/main: (28 commits) Adjust pyliger dependencies (openproblems-bio#43) Minor run adjustments (openproblems-bio#44) Fix reference in task description (openproblems-bio#45) Remove grouping bottleneck (openproblems-bio#42) Retry with single core in geneformer (openproblems-bio#41) Adjustments based on benchmark run (openproblems-bio#39) Update compute environment (openproblems-bio#35) Replace "+" in batch names for liger (openproblems-bio#37) Update common submodule to commit 62268aa (openproblems-bio#38) Adjust features filter in scPRINT (openproblems-bio#36) minor tweaks to the cell cycle component (openproblems-bio#34) Update common submodule to commit a2e845 (openproblems-bio#33) Increase time resources (openproblems-bio#27) GPU adjustments (openproblems-bio#32) Add batch_hvg var column to solution (openproblems-bio#31) Add fine-tuned scGPT (openproblems-bio#17) Bump scIB to v1.1.7 (openproblems-bio#30) Pin scPRINT version (openproblems-bio#25) Increase UCE memory tag (openproblems-bio#24) Add exit codes helper file (openproblems-bio#26) ...
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Describe your changes
Increase allocated time for methods failing for 143 exit codes
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Proposed changes are described in the CHANGELOG.md
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