numpy copy issue in regression 1

openproblems-bio · Aug 11, 2024 · 008daf5 · 008daf5
1 parent ba24f2e
commit 008daf5
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Showing 2 changed files with 12 additions and 3 deletions.
diff --git a/.gitignore b/.gitignore
@@ -2,6 +2,7 @@
 .DS_Store
 
 # related to files
+params*
 resources*
 output/
 out/

diff --git a/src/metrics/regression_1/script.py b/src/metrics/regression_1/script.py
@@ -26,14 +26,22 @@
 # print(output)
 # output.to_csv(par['score'])
 
-print(output.values.shape, output.columns.to_numpy().shape)
+
+metric_ids = output.columns.to_numpy().reshape(1, -1)
+metric_values = output.values
+# if metric_ids.ndim == 1:
+#     metric_ids = metric_ids.reshape(1, -1)
+# if metric_values.ndim == 1:
+#     metric_values = metric_values.reshape(1, -1)
+
+print(metric_ids.shape, metric_values.shape)
 output = ad.AnnData(
     X=np.empty((0, 0)),
     uns={
         "dataset_id": par["layer"],
         "method_id": f"reg1-{par['method_id']}",
-        "metric_ids": output.columns.to_numpy(),
-        "metric_values": output.values[0]
+        "metric_ids": metric_ids,
+        "metric_values": metric_values
     }
 )
-Original file line number
+Diff line change
@@ Expand Up / @@ -2,6 +2,7 @@ @@
     .DS_Store
     # related to files
+    params*
     resources*
     output/
     out/
@@ Expand Down @@