Skip to content

Commit

Permalink
add config
Browse files Browse the repository at this point in the history
  • Loading branch information
rcannood committed Jul 19, 2024
1 parent d83a40f commit fe44cb8
Showing 1 changed file with 20 additions and 12 deletions.
32 changes: 20 additions & 12 deletions _viash.yaml
Original file line number Diff line number Diff line change
@@ -1,15 +1,23 @@
viash_version: 0.8.6
name: task_grn_inference
version: dev

source: src
target: target
description: A dynamic benchmark for gene regulatory network (GRN) inference
license: MIT

links:
issue_tracker: https://github.com/openproblems-bio/task_grn_inference/issues
repository: https://github.com/openproblems-bio/task_grn_inference
docker_registry: ghcr.io

# technical settings
organization: openproblems-bio
viash_version: 0.9.0-RC6

info:
test_resources:
# - type: s3
# path: s3://openproblems-data/resources_test/grn
# dest: resources_test

config_mods: |
.functionality.version := 'dev'
.functionality.arguments[.multiple == true].multiple_sep := ';'
.platforms[.type == 'docker'].target_registry := 'ghcr.io'
.platforms[.type == 'docker'].target_organization := 'openproblems-bio/task_grn_inference'
.platforms[.type == 'docker'].target_image_source := 'https://github.com/openproblems-bio/task_grn_inference'
.platforms[.type == "nextflow"].directives.tag := "$id"
.platforms[.type == "nextflow"].auto.simplifyOutput := false
.platforms[.type == "nextflow"].config.labels := { lowmem : "memory = 20.Gb", midmem : "memory = 50.Gb", highmem : "memory = 100.Gb", lowcpu : "cpus = 5", midcpu : "cpus = 15", highcpu : "cpus = 30", lowtime : "time = 1.h", midtime : "time = 4.h", hightime : "time = 8.h", veryhightime : "time = 24.h" }
.platforms[.type == "nextflow"].config.script := "process.errorStrategy = 'ignore'"
.platforms[.type == "nextflow"].config.labels := { lowmem : "memory = 20.Gb", midmem : "memory = 50.Gb", highmem : "memory = 100.Gb", lowcpu : "cpus = 5", midcpu : "cpus = 15", highcpu : "cpus = 30", lowtime : "time = 1.h", midtime : "time = 4.h", hightime : "time = 8.h", veryhightime : "time = 24.h" }

0 comments on commit fe44cb8

Please sign in to comment.