add resources in downstream

openproblems-bio · Aug 26, 2024 · ce87a69 · ce87a69
1 parent 7fb85e6
commit ce87a69
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Showing 2 changed files with 5 additions and 2 deletions.
diff --git a/src/metrics/downstream/config.vsh.yaml b/src/metrics/downstream/config.vsh.yaml
@@ -90,6 +90,7 @@ info:
 resources:
   - type: r_script
     path: script.R
+  - path: /src/helpers/utils.R
 
 engines:
   - type: docker

diff --git a/src/metrics/downstream/script.R b/src/metrics/downstream/script.R
@@ -7,10 +7,12 @@ par <- list(
   output = "output.h5ad"
 )
 meta <- list(
-  name = "downstream"
-  # resources_dir = "target/executable/metrics/ks_statistics_scFeatures"
+  name = "downstream",
+  resources_dir = "target/executable/metrics/downstream"
 )
 
+source(paste0(meta[["resources_dir"]], "/utils.R"))
+
 ## VIASH END
 input_real_sp <- anndata::read_h5ad(par$input_spatial_dataset)
 input_sc <- anndata::read_h5ad(par$input_singlecell_dataset)