fix script

openproblems-bio · Dec 20, 2023 · 17af5b2 · 17af5b2
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commit 17af5b2
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Showing 11 changed files with 22 additions and 11 deletions.
diff --git a/results/_generate_task_pages.py b/results/_generate_task_pages.py
@@ -19,8 +19,9 @@
 title: "{task_name}"
 subtitle: "{task_summary}"
 engine: knitr
-image: featured.png
+image: thumbnail.svg
 page-layout: full
+css: ../task-template.css
 bibliography: ../../bibliography/library.bib
 ---
 

diff --git a/results/batch_integration_embed/index.qmd b/results/batch_integration_embed/index.qmd
@@ -2,8 +2,9 @@
 title: "Batch integration embed"
 subtitle: "Removing batch effects while preserving biological variation (embedding output)"
 engine: knitr
-image: featured.png
+image: thumbnail.svg
 page-layout: full
+css: ../task-template.css
 bibliography: ../../bibliography/library.bib
 ---
 

diff --git a/results/batch_integration_feature/index.qmd b/results/batch_integration_feature/index.qmd
@@ -2,8 +2,9 @@
 title: "Batch integration feature"
 subtitle: "Removing batch effects while preserving biological variation (feature output)"
 engine: knitr
-image: featured.png
+image: thumbnail.svg
 page-layout: full
+css: ../task-template.css
 bibliography: ../../bibliography/library.bib
 ---
 

diff --git a/results/batch_integration_graph/index.qmd b/results/batch_integration_graph/index.qmd
@@ -2,8 +2,9 @@
 title: "Batch integration graph"
 subtitle: "Removing batch effects while preserving biological variation (graph output)"
 engine: knitr
-image: featured.png
+image: thumbnail.svg
 page-layout: full
+css: ../task-template.css
 bibliography: ../../bibliography/library.bib
 ---
 

diff --git a/results/cell_cell_communication_ligand_target/index.qmd b/results/cell_cell_communication_ligand_target/index.qmd
@@ -2,8 +2,9 @@
 title: "Cell-Cell Communication Inference (Ligand-Target)"
 subtitle: "Detect interactions between ligands and target cell types"
 engine: knitr
-image: featured.png
+image: thumbnail.svg
 page-layout: full
+css: ../task-template.css
 bibliography: ../../bibliography/library.bib
 ---
 

diff --git a/results/cell_cell_communication_source_target/index.qmd b/results/cell_cell_communication_source_target/index.qmd
@@ -2,8 +2,9 @@
 title: "Cell-Cell Communication Inference (Source-Target)"
 subtitle: "Detect interactions between source and target cell types"
 engine: knitr
-image: featured.png
+image: thumbnail.svg
 page-layout: full
+css: ../task-template.css
 bibliography: ../../bibliography/library.bib
 ---
 

diff --git a/results/denoising/index.qmd b/results/denoising/index.qmd
@@ -2,8 +2,9 @@
 title: "Denoising"
 subtitle: "Removing noise in sparse single-cell RNA-sequencing count data"
 engine: knitr
-image: featured.png
+image: thumbnail.svg
 page-layout: full
+css: ../task-template.css
 bibliography: ../../bibliography/library.bib
 ---
 

diff --git a/results/dimensionality_reduction/index.qmd b/results/dimensionality_reduction/index.qmd
@@ -2,8 +2,9 @@
 title: "Dimensionality reduction for visualisation"
 subtitle: "Reduction of high-dimensional datasets to 2D for visualization & interpretation"
 engine: knitr
-image: featured.png
+image: thumbnail.svg
 page-layout: full
+css: ../task-template.css
 bibliography: ../../bibliography/library.bib
 ---
 

diff --git a/results/label_projection/index.qmd b/results/label_projection/index.qmd
@@ -2,8 +2,9 @@
 title: "Label Projection"
 subtitle: "Automated cell type annotation from rich, labeled reference data"
 engine: knitr
-image: featured.png
+image: thumbnail.svg
 page-layout: full
+css: ../task-template.css
 bibliography: ../../bibliography/library.bib
 ---
 

diff --git a/results/matching_modalities/index.qmd b/results/matching_modalities/index.qmd
@@ -2,8 +2,9 @@
 title: "Multimodal Data Integration"
 subtitle: "Alignment of cellular profiles from two different modalities"
 engine: knitr
-image: featured.png
+image: thumbnail.svg
 page-layout: full
+css: ../task-template.css
 bibliography: ../../bibliography/library.bib
 ---
 

diff --git a/results/spatial_decomposition/index.qmd b/results/spatial_decomposition/index.qmd
@@ -2,8 +2,9 @@
 title: "Spatial Decomposition"
 subtitle: "Calling cell-type compositions for spot-based spatial transcriptomics data"
 engine: knitr
-image: featured.png
+image: thumbnail.svg
 page-layout: full
+css: ../task-template.css
 bibliography: ../../bibliography/library.bib
 ---