fix: schema fixes

opentargets · Nov 22, 2024 · 55f947f · 55f947f
1 parent 42e4ce9
commit 55f947f
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diff --git a/src/gentropy/assets/schemas/intervals.json b/src/gentropy/assets/schemas/intervals.json
@@ -27,7 +27,7 @@
     {
       "metadata": {},
       "name": "geneId",
-      "nullable": false,
+      "nullable": true,
       "type": "string"
     },
     {

diff --git a/src/gentropy/dataset/intervals.py b/src/gentropy/dataset/intervals.py
@@ -100,7 +100,8 @@ def overlap_variant_index(
                     ],
                     how="inner",
                 )
-                .drop("start", "end", "vi_chromosome", "position")
+                .drop("vi_chromosome", "position")
+                # .drop("start", "end", "vi_chromosome", "position")
             ),
             _schema=Intervals.get_schema(),
         )