-
Notifications
You must be signed in to change notification settings - Fork 9
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
feat(airflow): include COLOC as a node in the DAG (#530)
* feat: split colocalisation step into two nodes: coloc and ecaviar * feat: filter credible sets to be colocalised based on method * fix(dag): update coloc dependencies * revert(config): revert colocalisation output location * feat(coloc): _get_colocalisation_class to import methods dynamically * refactor(step): remove method enum * refactor(step): do not hardcode method value * fix(config): typo in static_assets * refactor(dag): uncomment steps
- Loading branch information
1 parent
d89ec86
commit bc1a112
Showing
5 changed files
with
66 additions
and
8 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,7 @@ | ||
defaults: | ||
- colocalisation | ||
|
||
credible_set_path: ${datasets.credible_set} | ||
study_index_path: ${datasets.study_index} | ||
coloc_path: ${datasets.colocalisation} | ||
colocalisation_method: ECaviar |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters