fix: purity threshold

opentargets · Jun 11, 2024 · c75e04a · c75e04a
1 parent 6ae95b5
commit c75e04a
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/gentropy/susie_finemapper.py b/src/gentropy/susie_finemapper.py
@@ -1176,7 +1176,7 @@ def credible_set_qc(
         study_index: StudyIndex,
         ld_index: LDIndex,
         p_value_threshold: float = 1e-5,
-        purity_min_r2: float = 0.25,
+        purity_min_r2: float = 0.01,
     ) -> StudyLocus:
         """Filter credible sets by lead P-value and min-R2 purity, and performs LD clumping.