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    33 repositories

    • cancer-models

      Public
      PDCM Finder - cancermodels.org web portal code base
      TypeScript
      •
      Apache License 2.0
      •0•3•12•4•Updated Jan 16, 2025Jan 16, 2025

    • data-dashboard

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 16, 2025Jan 16, 2025

    • pdcm-submission

      Public
      Data submission portal for CancerModels.org. It helps users in getting familiar with the data model and validating their submission.
      TypeScript
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Jan 15, 2025Jan 15, 2025

    • MI-Standard-In-vitro-models

      Public
      a Minimal Information standard to describe the invitro models
      0•0•0•0•Updated Jan 15, 2025Jan 15, 2025

    • pdcm-etl

      Public
      ETL process for the PDCM project
      Python
      •
      Apache License 2.0
      •1•1•13•0•Updated Jan 14, 2025Jan 14, 2025

    • entity2Ontology

      Public
      Tool for mapping source entities to ontology terms
      Java
      •
      Apache License 2.0
      •0•0•0•0•Updated Jan 10, 2025Jan 10, 2025

    • PDCM-corpus

      Public
      Repository for PDCM Corpus
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Dec 23, 2024Dec 23, 2024

    • pdcm-admin-api

      Public
      API for PDCM Admin
      Java
      •1•1•5•0•Updated Dec 11, 2024Dec 11, 2024

    • PdcmDataTransformers

      Public
      Jupyter notebooks and python code for more of the bespoke data tranformations
      Jupyter Notebook
      •0•3•1•0•Updated Dec 5, 2024Dec 5, 2024

    • pdcm-admin-ui

      Public
      PDCM Admin provides an easy way to manage key processes that are an input for the PDCM Finder project, like the mappings of treatments and diagnoses.
      JavaScript
      •
      Apache License 2.0
      •1•1•2•0•Updated Dec 5, 2024Dec 5, 2024

    • pdx-transformer

      Public
      Repository for all modules used for transforming provider database schema to PDX Finder's datamodel
      Java
      •1•0•0•0•Updated Nov 18, 2024Nov 18, 2024

    • prompt-llm

      Public
      Python
      •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • CancerModels.org-Data-Analysis

      Public
      This repository contains Jupyter notebooks designed for analyzing and visualizing expression and mutation data retrieved from the CancerModels.org API.
      Jupyter Notebook
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Oct 29, 2024Oct 29, 2024

    • validator

      Public
      Template validator microservice use for PDX Finder
      Java
      •0•0•0•0•Updated Oct 9, 2024Oct 9, 2024

    • pdcm-lectern-validator

      Public
      Template validator service for PDCM Finder using Lectern
      TypeScript
      •
      Apache License 2.0
      •0•2•9•0•Updated Oct 3, 2024Oct 3, 2024

    • cancer-models-ebi-search-export

      Public
      Prepares CancerModels.Org data to be indexed by EBI Search
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jul 25, 2024Jul 25, 2024

    • pdcm-labelstudio

      Public
      Apache License 2.0
      •0•0•0•0•Updated Jun 5, 2024Jun 5, 2024

    • pdcm-api

      Public
      API to power the webapp for the PDCM project
      Python
      •
      Apache License 2.0
      •0•1•1•0•Updated May 29, 2024May 29, 2024

    • pdcm-web-ui

      Public
      PDCM Finder web portal
      TypeScript
      •
      Apache License 2.0
      •3•1•4•1•Updated Jan 30, 2024Jan 30, 2024

    • mutation-annotater

      Public
      annotation pipeline for PDXFinder mut and cna templates using VEP
      Python
      •0•1•0•0•Updated Jan 17, 2024Jan 17, 2024

    • pdxfinder

      Public
      PDX Finder performs integration, standardization, analysis and visualization of the complex and diverse data associated with PDX mouse models for the cancer community.
      Java
      •
      Apache License 2.0
      •6•6•114•3•Updated Jul 7, 2023Jul 7, 2023

    • cancermodels_notification_service

      Public
      Notification service for availability of new model information in collaborative resources.
      Python
      •0•0•0•0•Updated Jun 22, 2023Jun 22, 2023

    • db-docu-to-markdown

      Public
      Generation of markdown documentation for a database
      documentation-tooldatabase-schemadocumentation-generator
      Go
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 16, 2023Jun 16, 2023

    • db-descriptor

      Public
      A simple Go utility to describe a database (like entity names, column names, and comments)
      Go
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 16, 2023Jun 16, 2023

    • pdx-liftover

      Public
      Java
      •0•1•0•0•Updated Mar 17, 2023Mar 17, 2023

    • pdx-gun

      Public
      Java
      •
      Apache License 2.0
      •1•0•0•3•Updated Nov 16, 2022Nov 16, 2022

    • pdx-admin-api

      Public
      Java
      •1•0•0•0•Updated Aug 25, 2022Aug 25, 2022

    • expression-data-test

      Public
      0•0•0•0•Updated Apr 21, 2022Apr 21, 2022

    • ontolia

      Public
      Java
      •0•0•0•0•Updated Feb 8, 2022Feb 8, 2022

    • data-model

      Public
      Data Model including dao and repositories of the PDX Finder app
      HTML
      •
      Apache License 2.0
      •0•0•0•0•Updated Mar 24, 2021Mar 24, 2021