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    60 repositories

    • aeon_api

      Public
      Project Aeon low-level library for interfacing with acquired data. Contains modules for raw data file io, data querying, and data processing.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•1•3•Updated Feb 5, 2025Feb 5, 2025

    • aeon_docs

      Public
      Online docs repo for Project Aeon.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•35•5•Updated Feb 5, 2025Feb 5, 2025

    • NeuralPlayground

      Public
      The standardised environment for the hippocampus and entorhinal cortex models
      Python
      •
      Other
      •6•67•10•2•Updated Feb 4, 2025Feb 4, 2025

    • aeon_experiments

      Public
      Experiment workflows for Project Aeon
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•91•2•Updated Feb 3, 2025Feb 3, 2025

    • crabs-exploration

      Public
      A toolkit for detecting and tracking crabs in the field.
      computer-visionobject-detectionneuroinformaticscomputer-vision-toolsanimal-behaviourcrabsvideo-processing-pipeline
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•7•44•9•Updated Jan 31, 2025Jan 31, 2025

    • aeon_mecha

      Public
      Project Aeon's main library for interfacing with acquired data. Contains modules for raw data file io, data querying, data processing, data qc, database ingestion, and building computational data pipelines.
      python
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •6•6•50•3•Updated Jan 31, 2025Jan 31, 2025

    • sequences_run_PPseq

      Public
      Preparing data for and running PPseq for the sequences project
      Jupyter Notebook
      •1•0•0•0•Updated Jan 28, 2025Jan 28, 2025

    • sequences_neuropixel_preprocess

      Public
      pre-processing scripts for neuropixels data for the sequence project
      Jupyter Notebook
      •1•1•0•0•Updated Jan 28, 2025Jan 28, 2025

    • aeon_sleap_processing

      Public
      Project Aeon computational data pipeline for post-process refinement of SLEAP data using zoomed in cameras.
      C#
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•1•Updated Jan 24, 2025Jan 24, 2025

    • aeon_scratchpad

      Public
      Data Analysis code for Project Aeon
      BSD 3-Clause "New" or "Revised" License
      •0•0•2•0•Updated Jan 23, 2025Jan 23, 2025

    • lasagna

      Public
      3-D imaging visualisation through slicing
      neuroscienceregistrationanatomypythonpyqtgraph
      Python
      •
      GNU General Public License v3.0
      •7•29•103•0•Updated Jan 14, 2025Jan 14, 2025

    • rc2_analysis

      Public
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Jan 13, 2025Jan 13, 2025

    • rc2_figures

      Public
      First version of figures for the roller coaster project
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Jan 13, 2025Jan 13, 2025

    • sequences_histology

      Public
      histology plots for sequences project
      Jupyter Notebook
      •1•1•0•0•Updated Dec 24, 2024Dec 24, 2024

    • sequences_behaviour

      Public
      scripts for running and post-hoc analysis of the 8 poke sequence behavioural task
      Jupyter Notebook
      •1•1•0•0•Updated Dec 23, 2024Dec 23, 2024

    • rc2_vr

      Public
      Library to handle VR in the translocator setup
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

    • rc2_visual_stimuli

      Public
      Visual stimuli for translocator setup
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

    • rc2_matlab

      Public
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Dec 16, 2024Dec 16, 2024

    • rc2_analysis_videos

      Public
      Matlab scripts to analyse behavioural data using the cameras as data source.
      MATLAB
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

    • neuroPico

      Public
      MicroPython Library for NeuroPico
      Python
      •
      Other
      •0•0•0•0•Updated Dec 2, 2024Dec 2, 2024

    • aeon_feeder_v2

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Nov 29, 2024Nov 29, 2024

    • FNT_probe_localization

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

    • microharp

      Public
      A Harp protocol and device application framework micropython package.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•4•0•1•Updated Nov 4, 2024Nov 4, 2024

    • aeon_acquisition

      Public
      Task control and acquisition systems for Project Aeon.
      C#
      •
      BSD 3-Clause "New" or "Revised" License
      •4•6•6•2•Updated Nov 1, 2024Nov 1, 2024

    • aeon_schema

      Public
      A library that defines Project Aeon reusable JSON data schemas
      0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

    • sjbpod

      Public
      MATLAB
      •0•0•0•0•Updated Oct 22, 2024Oct 22, 2024

    • FNT_timestamp_alignment

      Public
      Pipeline for aligning harp and ephys timestamps to a single master clock.
      Jupyter Notebook
      •0•2•3•0•Updated Sep 12, 2024Sep 12, 2024

    • FNT_behavior_analysis

      Public
      Pipeline for giving an overview of behavioural data from mice in the flexible navigation task.
      MATLAB
      •0•1•0•0•Updated Sep 10, 2024Sep 10, 2024

    • aeon_feeder_fix

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•1•Updated Aug 20, 2024Aug 20, 2024

    • glmhmm

      Public
      code to fit GLMs, HMMs, and GLM-HMMs (aka IO-HMMs). Fork for FlexiVexi
      Jupyter Notebook
      •15•1•0•0•Updated Aug 14, 2024Aug 14, 2024