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    13 repositories

    • Open3DSIM

      Public
      This code was created by Ruijie Cao and Prof. Peng Xi in Peking University for 3D SIM reconstruction.
      Java
      •
      Apache License 2.0
      •9•0•0•0•Updated Feb 7, 2025Feb 7, 2025

    • tnia-python

      Public
      A collection of useful python utilities from True North Intelligent Algorithms
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •2•31•0•0•Updated Feb 6, 2025Feb 6, 2025

    • napari-easy-augment-batch-dl

      Public
      A plugin for deep learning labeling, augmenting, training and predicting on 2d image sets. Well suited for training specialist networks using a small number of labels.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•3•0•0•Updated Feb 5, 2025Feb 5, 2025

    • notebooks-and-napari-widgets-for-dl

      Public
      A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •0•12•1•0•Updated Nov 17, 2024Nov 17, 2024

    • notebooks-and-napari-widgets-for-dl-quarto

      Public
      A Quarto presentation on Jupyter Notebooks and Napari Widgets for Deep Learning given at the Northeast Bioimage Analysis Meeting
      JavaScript
      •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • segment-everything

      Public
      Utilities and helpers to segment everything using YOLO, SAM and friends.
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•3•Updated Nov 13, 2024Nov 13, 2024

    • napari-segment-everything

      Public
      A Napari SAM plugin to segment everything in your image (not just some things)
      Python
      •
      Other
      •1•6•0•0•Updated May 25, 2024May 25, 2024

    • intro-to-data-analysis

      Public
      An introduction to Python and the Python data analysis ecosystem
      Shell
      •
      MIT License
      •3•1•0•0•Updated Apr 10, 2024Apr 10, 2024

    • gpu-image-analysis-deep-learning

      Public
      A short course exploring GPU image analysis and deep learning
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •1•4•0•0•Updated Mar 5, 2024Mar 5, 2024

    • deconvolution-gpu-dl-course

      Public
      Course: Exploring the Intersection of Deconvolution, GPU Computing, and Deep Learning
      Shell
      •
      MIT License
      •1•5•0•0•Updated Jan 21, 2024Jan 21, 2024

    • Deconvolution-experiments

      Public
      A set of deconvolution experiments, benchmarks and sanity tests using different platforms
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 4, 2019Aug 4, 2019

    • MetroloJ-commands

      Public
      A set of commands which wrap Metroloj functionality and allows it to be called from KNIME/IJ2
      Java
      •0•1•0•0•Updated Jun 21, 2019Jun 21, 2019

    • FibrilTool2

      Public
      An ImageJ2 and KNIME compatible implementation of FibriTool
      Java
      •1•1•0•0•Updated Jan 28, 2018Jan 28, 2018