Repositories list

• etc

  Public
  Various workflows, scripts and functions

  R

  •1•0•0•0•Updated Sep 12, 2023Sep 12, 2023

• nxf-bacass_samlpesheet_generator

  Public
  Nextflow

  •1•0•0•0•Updated Oct 25, 2021Oct 25, 2021

• utils

  Public
  Shell

  •0•0•0•0•Updated Sep 2, 2021Sep 2, 2021

• ont-ncct

  Public
  Pipeline with GUI for nanopore-sequencing.

  Java

  •2•0•0•0•Updated Sep 2, 2021Sep 2, 2021

• ngs-reports

  Public
  Advanced Rmarkdown templates for generating NGS reports

  R

  •2•0•0•0•Updated Sep 2, 2021Sep 2, 2021

• nxf-fastqc

  Public
  A simple fastp-MultiQC nextflow pipeline

  Nextflow

  •6•0•0•0•Updated Sep 2, 2021Sep 2, 2021

• nxf-bcl

  Public
  A simple nextflow pipeline for Illumina run metrics (InterOp) and generation of fastq files (bcl2fastq)

  Nextflow

  •3•0•0•0•Updated Sep 2, 2021Sep 2, 2021

• nxf-ont

  Public
  A nextflow pipeline for processing raw Nanopore data

  Nextflow

  •3•0•0•0•Updated Sep 2, 2021Sep 2, 2021

• nxf-kraken2

  Public
  A simple nextflow pipeline for running kraken2 and bracken in a docker container

  Nextflow

  •

  MIT License

  •7•0•0•0•Updated Sep 2, 2021Sep 2, 2021

• documentation_IT

  Public
  Documentation about the pipelines and generell IT settings

  0•0•0•0•Updated Aug 25, 2021Aug 25, 2021

• test-datasets

  Public
  Test datasets for pipelines.

  0•0•0•0•Updated Aug 28, 2020Aug 28, 2020

• live-nano-type

  Public archive
  Live bacterial species typing with Oxford Nanopore sequencing

  MIT License

  •0•0•0•0•Updated Oct 28, 2019Oct 28, 2019