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    12 repositories

    • bam4igv

      Public
      host bam files to be display on ucsc genome browser
      0•0•0•0•Updated Jan 17, 2025Jan 17, 2025

    • cookiecutter-de_analysis_skeleton

      Public
      Skeleton for new differential expression analysis project.
      R
      •1•3•3•2•Updated Jan 14, 2025Jan 14, 2025

    • sidbdri-utils

      Public
      Download and process genome sequences and annotations from Ensembl.
      Shell
      •0•1•3•0•Updated Nov 22, 2024Nov 22, 2024

    • shiny-rna-seq

      Public
      Shiny app for examining the results produced by a differential expression analysis project modelled on "cookiecutter-de_analysis_skeleton" repository.
      R
      •0•0•0•0•Updated Sep 25, 2024Sep 25, 2024

    • LAB-AID

      Public
      LAB-AID (Laboratory Automated Interrogation of Data): an interactive web application for visualization of multi-level data from biological experiments
      visualizationbiologybioinformatics-visualization
      R
      •
      MIT License
      •0•1•0•0•Updated Apr 25, 2024Apr 25, 2024

    • empirical_utrs

      Public
      Calculate empirical 5' UTRs from CAGE data.
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 26, 2022Apr 26, 2022

    • transcript-utils

      Public
      Simple scripts to perform various tasks for gene transcripts and their sequences.
      Python
      •
      MIT License
      •1•0•1•0•Updated Apr 28, 2021Apr 28, 2021

    • GREAT

      Public
      Allows us to run the GREAT enrichment tools as part of our automatic pipeline.
      Shell
      •0•0•0•0•Updated Apr 26, 2021Apr 26, 2021

    • enrichment_rshiny

      Public
      Small Shiny app to perform Fisher's exact test for enrichment on gene sets and plot Venn diagrams.
      R
      •0•0•1•0•Updated Apr 2, 2020Apr 2, 2020

    • Sargasso

      Public
      Sargasso disambiguates mixed-species high-throughput sequencing data.
      Python
      •
      Other
      •4•0•0•0•Updated Aug 20, 2019Aug 20, 2019

    • MultiQC

      Public
      Aggregate results from bioinformatics analyses across many samples into a single report.
      Python
      •
      GNU General Public License v3.0
      •608•0•0•0•Updated Dec 14, 2017Dec 14, 2017

    • MultiQC_TestData

      Public
      Test data for MultiQC. See https://github.com/ewels/MultiQC
      HTML
      •
      MIT License
      •146•0•0•0•Updated Dec 13, 2017Dec 13, 2017