add -x vg test

pangenome · Apr 1, 2021 · 6ff1a28 · 6ff1a28
1 parent 31027e8
commit 6ff1a28
Showing 1 changed file with 4 additions and 2 deletions.
diff --git a/.github/workflows/build_and_test_docker.yml b/.github/workflows/build_and_test_docker.yml
@@ -9,5 +9,7 @@ jobs:
       - uses: actions/checkout@v2
       - name: Build the Docker image
         run: docker build . --file Dockerfile --tag pgge
-      - name: Run a test on the DRB1-3123 dataset
-        run: docker run -v ${PWD}/data/:/data pgge "pgge -g "/data/HLA/DRB1-3123/*.consensus*.gfa" -f /data/HLA/DRB1-3123/DRB1-3123.fa -r /scripts/beehave.R -t 2 -o /data/HLA/DRB1-3123/pgge_docker -l 1000 -s 1000 -p 100"
+      - name: Run a test on the DRB1-3123 dataset dbg
+        run: docker run -v ${PWD}/data/:/data pgge "pgge -g '/data/HLA/DRB1-3123/*.consensus*.gfa' -f /data/HLA/DRB1-3123/DRB1-3123.fa -r /scripts/beehave.R -t 2 -o /data/HLA/DRB1-3123/pgge_docker -l 1000 -s 1000 -p 100"
+      - name: Run a test on the DRB1-3123 dataset vg
+        run: docker run -v ${PWD}/data/:/data pgge "pgge -g '/data/HLA/DRB1-3123/*.consensus*.gfa' -f /data/HLA/DRB1-3123/DRB1-3123.fa -r /scripts/beehave.R -t 2 -o /data/HLA/DRB1-3123/pgge_docker -l 1000 -s 2000 -p 10 --graphaligner-vg-mode"