Code

ResFinder fixes (and AFP upgrade!)#97

Code

Merged

fmaguire merged 11 commits intopha4ge:masterpha4ge/hAMRonization:masterfrom zwets:resfinder-fixeszwets/hAMRonization:resfinder-fixesCopy head branch name to clipboardJan 3, 2025

+215-209

Commits

Commits on Dec 28, 2024

• Upgrade AMRFinderPlus hamronizer to 4.0.3

  zwets

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  1cc5686

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• AmrFinderPlus: nuc/prot detection is more subtle

  zwets

  committed
  a1ee7ef

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• Minor formatting fix to match project style

  zwets

  committed
  a789de8

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• AmrFinderPlus upgrade: update tests

  zwets

  committed
  5a6d274

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Commits on Dec 30, 2024

• Formatting fix

  zwets

  committed
  06f4380

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• ResFinder: fix error when coverage absent

  zwets

  committed
  366091d

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• ResFinder: leave coverage ratio alone

  zwets

  committed
  fcd2cef

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• ResFinder: fix variant phenotype collection

  zwets

  committed
  a6b4d45

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• ResFinder: pick correct database

  zwets

  committed
  3ea6fbb

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• ResFinder: fix failing test

  zwets

  committed
  b7b1599

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• Minor fixes in tests

  zwets

  committed
  1b16d1c

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