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sistr_cmd v0.3.5

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@peterk87 peterk87 released this 13 Apr 21:25
· 103 commits to master since this release

Added:

  • Default stdout of json.dumps of prediction results when no output dest (-o) specified
  • Optional expanded primary prediction output with more detailed results including full blastn results for antigen gene search with bool cmdline args --full-output and --report-blast-results
  • Utility output functions for serializing arbitrarily nested objects to dicts with regular literal/scalar values (str, int, float, bool, None) so json.dump(s) doesn't produce an error
  • More tests
  • better_exceptions (>=0.1.5) module for clearer exception messages (https://github.com/qix-/better-exceptions)

Fixed:

  • #18, increments tmp dir name + "_{count}" until new dir success fully created
  • No more annoying Pandas warning messages in stderr