Code

Dev/cohort assess#248

Code

Open

emilliman5 wants to merge 58 commits intopharmaR:developpharmaR/riskmetric:developfrom emilliman5:dev/cohort_assessemilliman5/riskmetric:dev/cohort_assessCopy head branch name to clipboard

+1,003-83

Commits

Commits on May 25, 2021

• Merge branch 'dev/dependencies_metric' into dev_ejm

  Show description for 08376ba
  

  Eric Milliman

  committed
  08376ba

  Copy full SHA for 08376ba

• Merge branch 'dev/namespace_metrics' into dev_ejm

  Show description for c9cf0d9
  

  Eric Milliman

  committed
  c9cf0d9

  Copy full SHA for c9cf0d9

• merge reverse dependency assessment into personal dev branch

  

  Eric Milliman

  committed
  c47d226

  Copy full SHA for c47d226

Commits on Jul 15, 2021

• fixed typo

  

  Eric Milliman

  committed
  399ec3a

  Copy full SHA for 399ec3a

• switched to lapply in place of sapply

  

  Eric Milliman

  committed
  c63a551

  Copy full SHA for c63a551

• initial cohort_ref class prototype

  

  Eric Milliman

  committed
  e9dd378

  Copy full SHA for e9dd378

Commits on Jul 19, 2021

• Merge branch 'pharmaR:master' into dev/cohort

  emilliman5

  authored
  d841b3a

  Copy full SHA for d841b3a

• fixed typos in documentation

  

  Eric Milliman

  committed
  14b9545

  Copy full SHA for 14b9545

• Merge branch 'dev/cohort' of github.com:emilliman5/riskmetric into dev/cohort

  

  Eric Milliman

  committed
  5043048

  Copy full SHA for 5043048

Commits on Aug 12, 2021

• created shell for a cohort ref class, updated exported namespace assessment.

  

  Eric Milliman

  committed
  dbc5ae5

  Copy full SHA for dbc5ae5

• Merge branch 'master' of github.com:emilliman5/riskmetric into dev/cohort

  

  Eric Milliman

  committed
  7421b16

  Copy full SHA for 7421b16

Commits on Sep 1, 2021

• fixed some iteration errors in assess_reverse_dependencies for cohorts

  

  Eric Milliman

  committed
  d3f8bb9

  Copy full SHA for d3f8bb9

• fixed documentation title

  

  Eric Milliman

  committed
  31a7751

  Copy full SHA for 31a7751

Commits on Mar 7, 2022

• update with with master

  Show description for 3afc305
  emilliman5

  committed
  3afc305

  Copy full SHA for 3afc305

Commits on Mar 8, 2022

• added cohort assessment of dependencies

  emilliman5

  committed
  ae3f132

  Copy full SHA for ae3f132

• beefing up cohort_ref class

  emilliman5

  committed
  18c2f6b

  Copy full SHA for 18c2f6b

• skeletons for two cohort metrics

  emilliman5

  committed
  77d1a43

  Copy full SHA for 77d1a43

Commits on Mar 23, 2022

• create explicit list_of_package_ref constructors. renamed pkg_library to library_ref, and modified its return value to be a list_of_package_ref

  emilliman5

  committed
  a063a2d

  Copy full SHA for a063a2d

• fixed missing parantheses

  emilliman5

  committed
  7da875a

  Copy full SHA for 7da875a

• rewrote cohort_ref constructor. added print and as_tibble functions for cohort_ref class

  emilliman5

  committed
  e27ede8

  Copy full SHA for e27ede8

Commits on Mar 24, 2022

• remove pkg_cohort function, and replace with cohort_ref (to be consistent with pkg_ref paradigm)

  emilliman5

  committed
  a1550b0

  Copy full SHA for a1550b0

Commits on Mar 30, 2022

• updated doc and ns

  emilliman5

  committed
  93ff994

  Copy full SHA for 93ff994

Commits on Apr 6, 2022

• copy pasta of pkg_metric for to cohort metric

  emilliman5

  committed
  3d85369

  Copy full SHA for 3d85369

• reformulation of dependency assess* and refs. In preperation for assess_has_dependency_conflict

  emilliman5

  committed
  1790e19

  Copy full SHA for 1790e19

• new cohort assessment for dependency conflicts

  emilliman5

  committed
  aaa40c6

  Copy full SHA for aaa40c6

Commits on Apr 11, 2022

• renamed "pkg" from copy pasta to "cohort"

  emilliman5

  committed
  2d912bf

  Copy full SHA for 2d912bf

Commits on Apr 12, 2022

• add cohort metric method.

  emilliman5

  committed
  7aec287

  Copy full SHA for 7aec287

• create aohort assessment dispatch function similar to pkg_assess

  emilliman5

  committed
  9d7d225

  Copy full SHA for 9d7d225

• fixed return value of assess_namespace_export for cohort_ref

  emilliman5

  committed
  732ce8f

  Copy full SHA for 732ce8f

• fixed return value of assess_reverse_dependencies for cohort_ref. added cohort_metric for assess_reverse_dependencies cohort_ref

  emilliman5

  committed
  bd32eb4

  Copy full SHA for bd32eb4

• namesspace and documentation update

  emilliman5

  committed
  fddcf76

  Copy full SHA for fddcf76

• documentation update

  emilliman5

  committed
  1bf7bea

  Copy full SHA for 1bf7bea

• cohort_score function, akin to pkg_score

  emilliman5

  committed
  7ca6815

  Copy full SHA for 7ca6815

• fixed some copy pasta errors

  emilliman5

  committed
  9fb36c7

  Copy full SHA for 9fb36c7

• renamed cohort_metric to metric_score

  emilliman5

  committed
  9760f62

  Copy full SHA for 9760f62

• changed return object type

  emilliman5

  committed
  f327189

  Copy full SHA for f327189

Commits on Apr 13, 2022

• added metric_score for cohort_ref assessment. fixed class typo in assessment return object

  emilliman5

  committed
  0656aa5

  Copy full SHA for 0656aa5

• fixed attribute typos

  emilliman5

  committed
  aa13d58

  Copy full SHA for aa13d58

• added summarized cohort score

  emilliman5

  committed
  8b4c500

  Copy full SHA for 8b4c500

Commits on Apr 15, 2022

• namespace and description updates

  emilliman5

  committed
  460feca

  Copy full SHA for 460feca

• removed unnessary assessment checks due to rework of where dependecy info is cached.

  emilliman5

  committed
  87d14b3

  Copy full SHA for 87d14b3

• tried to added an assessment for a pkg_ref to satisfy metric_label unit test

  emilliman5

  committed
  1291b21

  Copy full SHA for 1291b21

• fixed test now that table of dependencies is cached instead of computed at assessment.

  emilliman5

  committed
  b212f4a

  Copy full SHA for b212f4a

• documentation updated

  emilliman5

  committed
  c4aa559

  Copy full SHA for c4aa559

• added a conditional. If no S3 methods exist for the classess provided, get the default method.

  emilliman5

  committed
  ab9fc81

  Copy full SHA for ab9fc81

• added labels to all metric_score_* functions. this is to help ensure unit tests pass

  emilliman5

  committed
  12dfe71

  Copy full SHA for 12dfe71

• Merge branch 'metrics_score' into dev/cohort_assess

  Show description for 55d28c8
  emilliman5

  committed
  55d28c8

  Copy full SHA for 55d28c8

• moved dplyr to imports...for now. ulitmately want to remove it as a dependency

  emilliman5

  committed
  c63452f

  Copy full SHA for c63452f

• fix argument consistentcy with print generic

  emilliman5

  committed
  08df7d3

  Copy full SHA for 08df7d3

• removed duplicate functions definitions

  emilliman5

  committed
  1bfadd0

  Copy full SHA for 1bfadd0

• added importFrom to assessment roxygen header

  emilliman5

  committed
  56f3031

  Copy full SHA for 56f3031

• fixed function call from cohort_assessment to ass_cohort_assessment

  emilliman5

  committed
  df7d71a

  Copy full SHA for df7d71a

• added import directive for installed.packages from utils

  emilliman5

  committed
  5ed510e

  Copy full SHA for 5ed510e

• documentation update

  emilliman5

  committed
  5edc08e

  Copy full SHA for 5edc08e

• added stringr to imports. will investigate possibilibity of removing stringr depenedency

  emilliman5

  committed
  ee35d80

  Copy full SHA for ee35d80

Commits on Apr 19, 2022

• documentation updates

  emilliman5

  committed
  36fe2ba

  Copy full SHA for 36fe2ba

• made s3 dispatch consistent

  emilliman5

  committed
  e40a7bf

  Copy full SHA for e40a7bf

• updated test expectations

  emilliman5

  committed
  b45ba67

  Copy full SHA for b45ba67