pulsar_docker

Builds a docker image for a pulsar analysis packages with sigpyproc and few extras on Ubuntu 16.04 LTS. Base forked from @mserylak.

Includes

• sigpyproc
• miniconda with:
  • numpy
  • scipy
  • pandas
  • h5py
  • astropy
  • matplotlib
  • seaborn
• and all their dependencies (fftw, etc)

You'll find all pulsar software in /home/psr/software, environment variables are set according to ~/.mysetenv.bash file.

Using

To build:

docker build -t pulsar_docker .

To run image:

docker run -it pulsar_docker /bin/bash

To mount data directory into the docker container with the -v flag:

docker run -it -v <data_location>:/data pulsar_docker /bin/bash

This will drop you in to an ubuntu os with bash shell with all data in /data.

To run the image with X11 and mounted data directory, run the container first:

docker run -d -p 2222:22 -v <data_location>:/data pulsar_docker

Check if container is running with docker ps -a. You can log in using psr as password:

ssh -XY psr@localhost -p 2222

Issues

Change permissions on /miniconda folder: TODO. Report problems to [email protected]