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Package management made easy

Rust 3,766 214 Updated Jan 27, 2025

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

Nextflow 134 38 Updated Jan 27, 2025

FASTQ sequence quality visualisation with Emoji

Python 170 17 Updated Nov 19, 2024

Generate random names (adj-noun) like docker and github.

Python 64 11 Updated Apr 24, 2023

Random name generator in Python

Python 15 8 Updated Dec 4, 2023

Memray is a memory profiler for Python

Python 13,618 399 Updated Jan 13, 2025

Libre calorie counter app for Android. Built with Cordova.

JavaScript 593 72 Updated Jan 27, 2025

Accurate metagenomic profiling && Fast large-scale sequence/genome searching

Go 184 13 Updated Sep 22, 2023

MGnify API toolkit

Python 21 4 Updated Mar 20, 2024

This repo collects the list of learning online resources related to microbiome computational science and tools.

80 12 Updated Nov 14, 2024

Python package for compositional data analysis including CLR/ILR, proportionality, partial correlation with basis shrinkage, and visualizations.

Python 18 1 Updated Aug 28, 2023

TwitRSS.me: Tool to make Twittter timelines and searches into RSS feeds

Perl 358 58 Updated May 25, 2022

Bash Automated Testing System

Shell 5,088 428 Updated Jan 24, 2025

An opinionated list of awesome Python frameworks, libraries, software and resources.

Python 231,813 25,165 Updated Aug 11, 2024

R shiny app for interactive microbiome analysis

R 55 18 Updated Feb 1, 2024

API Documentation for Python Projects

Python 2,020 196 Updated Dec 12, 2024

Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies

HTML 18 2 Updated Jun 14, 2023

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

C 272 22 Updated Dec 26, 2024

📰 RSS/Atom feed reader

JavaScript 886 190 Updated Jan 27, 2025

Interactive Data Visualization in the browser, from Python

TypeScript 19,553 4,203 Updated Jan 27, 2025

A high-performance, Pythonic language for bioinformatics

C++ 699 50 Updated Dec 8, 2022

A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.

C++ 52 18 Updated Jan 27, 2025

Code examples of fast and simple k-mer counters for tutorial purposes

C++ 167 15 Updated Mar 10, 2020

Conda recipes for the bioconda channel.

Shell 1,667 3,335 Updated Jan 27, 2025

Master the command line, in one page

154,476 14,603 Updated Jun 25, 2024

With Holoviews, your data visualizes itself.

Python 2,741 404 Updated Jan 27, 2025

Extremely simple yet powerful header-only C++ plotting library built on the popular matplotlib

C++ 4,509 1,155 Updated Nov 21, 2023

Reprocible analyses accompanying the paper introducing the decontam method

HTML 3 2 Updated Jun 28, 2021

A Python command-line shell

Python 178 9 Updated Nov 15, 2019

Fast Whole-Genome Similarity (ANI) Estimation

C++ 386 67 Updated Jan 10, 2024
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