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manulera committed May 17, 2024
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4 changes: 2 additions & 2 deletions docs/phenotypes.md
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- toc
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!!! info "To make phenotype annotations, you need to add genotypes first: see [how to add genotypes](./genes_alleles_genotypes.md)"
!!! info "To make phenotype annotations, you need to add genotypes first: see [how to add genotypes](./genotype_management.md)"

## Video summary

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On the `Quick Links` list, click on `Phenotype` to open a window that requires you to indicate:

* **Genotype:** you can choose from the genotypes added to the session from a dropdown (see [how to add genotypes](./genes_alleles_genotypes.md)). Click on the magnifying glass on the right to use a search box instead of a drop-down menu.
* **Genotype:** you can choose from the genotypes added to the session from a dropdown (see [how to add genotypes](./genotype_management.md)). Click on the magnifying glass on the right to use a search box instead of a drop-down menu.
* **Term name:** a FYPO term describing the phenotype associated with the genotype you selected above.
* Start typing a phenotype in the search box. If you do not find the precise phenotype you are looking for, choose a broad term (e.g. abnormal spindle) that can be refined later.
* Click the chosen term, and verify that the displayed definition describes the phenotype you want to annotate. There is sometimes a "Comment" section with extra tips for annotation.
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1 change: 1 addition & 0 deletions pyproject.toml
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description = ""
name = "canto_tutorial"
version = "0.1.0"
package-mode = false

[tool.poetry.dependencies]
python = "^3.9"
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