clears output for restarted jobs

[skatnagallu]

Temporary fix for the issue mentioned in pyiron base.

This is a temporary solution.

[coveralls]

Pull Request Test Coverage Report for Build 10598107093

Warning: This coverage report may be inaccurate.

This pull request's base commit is no longer the HEAD commit of its target branch. This means it includes changes from outside the original pull request, including, potentially, unrelated coverage changes.

• For more information on this, see Tracking coverage changes with pull request builds.
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Details

• 9 of 10 (90.0%) changed or added relevant lines in 1 file are covered.
• 1 unchanged line in 1 file lost coverage.
• Overall coverage increased (+0.005%) to 70.939%

---

Changes Missing Coverage	Covered Lines	Changed/Added Lines	%
pyiron_atomistics/sphinx/base.py	9	10	90.0%

Files with Coverage Reduction	New Missed Lines	%
pyiron_atomistics/sphinx/base.py	1	80.06%

Totals
Change from base Build 10575355657:	0.005%
Covered Lines:	10687
Relevant Lines:	15065

---

💛 - Coveralls

[jan-janssen]

Can you call the same clear_output_for_restart() function in the __init__() function of the Output class? This hopefully prevents us from changing both independent from each other.

[freyso]

What about simply calling the function clear or setup_fresh or something like this?
I find it confusing for newcomers to see a function clear_output_for_restart in an __init__ function. It might also be advantageous to keep the function once the output copying issue is fixed, in case one would like to redo the output parsing and ensure that no unexpected items are left in (say: if we discover additional parsing bugs and want to redo the parsing for an existing expensive calculation).

[jan-janssen]

Looks good to me, still I would like @samwaseda to take a quick look as he is currently the maintainer of the Sphinx interface in pyiron.

[samwaseda]

Fine by me.

[freyso]

fine for me.