Update to main

.ci_support/environment.yml

@@ -4,10 +4,10 @@ dependencies:
 - coveralls
 - coverage
 - codacy-coverage
-- pyiron_base=0.5.29
-- matplotlib=3.6.2
-- temmeta=0.0.6
+- pyiron_base=0.10.7
+- matplotlib=3.9.2
 - pystem=0.0.26
 - match-series
-- hyperspy=1.7.3
+- hyperspy=2.2.0
+- sparse
 - scanf

.github/workflows/UpdateDependabotPR.yml

@@ -15,9 +15,11 @@ jobs:
           fetch-depth: 0 # otherwise, you will fail to push refs to dest repo
           token: ${{ secrets.DEPENDABOT_WORKFLOW_TOKEN }}
       - name: UpdateEnvironmentFile
+        env:
+          PR_TITLE: ${{ github.event.pull_request.title }}
         shell: bash -l {0}
         run: |
-          python .ci_support/update_environment.py ${{ github.event.pull_request.title }}
+          python .ci_support/update_environment.py $PR_TITLE
       - name: UpdateDependabotPR commit
         run: |
           git config --local user.email "[email protected]"

.github/workflows/deploy.yml

@@ -1,19 +1,27 @@
+# This workflow is used to upload and deploy a new release to PyPi
+# Based on https://github.com/pypa/gh-action-pypi-publish
+
 name: PyPi Release
 
 on:
     push:
     pull_request:
+    workflow_dispatch:
 
-# based on https://github.com/pypa/gh-action-pypi-publish
 jobs:
   build:
+    if: startsWith(github.event.ref, 'refs/tags') || github.event_name == 'release'
     runs-on: ubuntu-latest
-
+    environment:
+      name: pypi
+      url: https://pypi.org/p/pyiron_experimental
+    permissions:
+      id-token: write
     steps:
     - uses: actions/checkout@v2
     - uses: actions/setup-python@v2
       with:
-        python-version: "3.10"
+        python-version: "3.11"
 
     - name: Install dependencies
       run: >-
@@ -25,8 +33,4 @@ jobs:
       run: >-
         python setup.py sdist bdist_wheel
     - name: Publish distribution 📦 to PyPI
-      if: startsWith(github.event.ref, 'refs/tags') || github.event_name == 'release'
-      uses: pypa/gh-action-pypi-publish@master
-      with:
-        user: __token__
-        password: ${{ secrets.pypi_password }}
+      uses: pypa/gh-action-pypi-publish@release/v1

.github/workflows/notebooks.yml

@@ -16,14 +16,15 @@ jobs:
 
     steps:
     - uses: actions/checkout@v2
-    - uses: conda-incubator/setup-miniconda@v2
+    - uses: conda-incubator/setup-miniconda@v2.2.0
       with:
-        python-version: "3.10"
+        python-version: "3.11"
         mamba-version: "*"
         channels: conda-forge
         channel-priority: strict
         auto-update-conda: true  
         environment-file: binder/environment.yml
+        miniforge-variant: Mambaforge
     - name: Setup
       shell: bash -l {0}
       run: |

.github/workflows/pypicheck.yml

@@ -11,14 +11,15 @@ jobs:
     runs-on: ubuntu-latest
     steps:
     - uses: actions/checkout@v2
-    - uses: conda-incubator/setup-miniconda@v2
+    - uses: conda-incubator/setup-miniconda@v2.2.0
       with:
-        python-version: 3.8
+        python-version: "3.10"
         mamba-version: "*"
         channels: conda-forge
         channel-priority: strict
         auto-update-conda: true
         environment-file: .ci_support/environment.yml
+        miniforge-variant: Mambaforge
     - name: Setup
       shell: bash -l {0}
       run: |

.github/workflows/unittests.yml

@@ -16,18 +16,19 @@ jobs:
     strategy:
       matrix:
         operating-system: [ubuntu-latest]
-        python-version: [3.8, 3.9]
+        python-version: ["3.10", "3.11"]
 
     steps:
     - uses: actions/checkout@v2
-    - uses: conda-incubator/setup-miniconda@v2
+    - uses: conda-incubator/setup-miniconda@v2.2.0
       with:
         python-version: ${{ matrix.python-version }}
         mamba-version: "*"
         channels: conda-forge
         channel-priority: strict
         auto-update-conda: true  
         environment-file: .ci_support/environment.yml
+        miniforge-variant: Mambaforge
     - name: Setup
       shell: bash -l {0}
       run: |

binder/environment.yml

@@ -1,12 +1,12 @@
 channels:
 - conda-forge
 dependencies:
-- pyiron_base=0.5.29
-- matplotlib=3.6.2
-- temmeta=0.0.6
+- pyiron_base=0.6.16
+- matplotlib=3.9.2
 - pystem =0.0.26
 - match-series
-- hyperspy=1.7.3
+- hyperspy=2.2.0
 - scanf
+- sparse
 - papermill
-- numpy=1.22.3
+- jupyter