update changelog

qbic-pipelines · Jan 29, 2025 · 39b93d4 · 39b93d4
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -11,7 +11,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 - [#15](https://github.com/qbic-pipelines/vcftomat/pull/15) - template update to v3.1.1
 - [#16](https://github.com/qbic-pipelines/vcftomat/pull/16) - Fix bcftools/reheader bug
-- [#1](https://github.com/qbic-pipelines/vcftomat/pull/1) - template update to v3.2.0
+- [#21](https://github.com/qbic-pipelines/vcftomat/pull/21) - template update to v3.2.0
 
 ## v1.1.0 - Newton Puccoon - 08.01.2025
 

diff --git a/workflows/vcftomat.nf b/workflows/vcftomat.nf
@@ -25,8 +25,11 @@ workflow VCFTOMAT {
 
     take:
     ch_samplesheet // channel: samplesheet read in from --input
-    main:
+    fasta
+    fai
+    dict
 
+    main:
     ch_versions = Channel.empty()
     ch_multiqc_files = Channel.empty()
 
@@ -241,7 +244,9 @@ workflow VCFTOMAT {
         []
     )
 
-    emit:multiqc_report = MULTIQC.out.report.toList() // channel: /path/to/multiqc_report.html
+    emit:
+    csv            = VCF2MAT.out.csv             // channel: *.csv
+    multiqc_report = MULTIQC.out.report.toList() // channel: /path/to/multiqc_report.html
     versions       = ch_versions                 // channel: [ path(versions.yml) ]
 
 }