1.1.0 - Newton Puccoon

Added

• #7 - samplenames to columns
• #8 - concat for sample, label pairs

Fixed

• #5 - filename collision
• #10 - prepare release 1.1.0

1.0.0 - Curie Purpureal

This is the initial release of a pipeline that can take (g)VCF files and converts them a table format useful for statistical analysis.

1. Indexes (g.)vcf files (tabix)
2. Converts g.vcf files to vcf with genotypegvcf (GATK)
3. Merges all vcfs from the same sample with bcftools/merge (bcftools)
4. Converts the (merged) vcfs to a matrix using a custom R script written by @ellisdoro (R)
5. Collects all reports into a MultiQC report (MultiQC)