Update readme and som default settings

GLLIBSRC/Sphere.cpp

@@ -5,10 +5,10 @@
 int Sphere::fai=0;
 int Sphere::theta=0;
 
-#define c_MXNFAI 64
-#define c_MXNTHETA 64
-#define DEFAUT_NUMFAI   12
-#define DEFAUT_NUMTHETA 12
+#define c_MXNFAI 128
+#define c_MXNTHETA 128
+#define DEFAUT_NUMFAI   32
+#define DEFAUT_NUMTHETA 32
 
 static float cosfai[c_MXNFAI], sinfai[c_MXNFAI];
 static float costheta[c_MXNTHETA],sintheta[c_MXNTHETA]; 

README.md

@@ -1,15 +1,21 @@
 # VisAtom
-A tool for visualizing MD data coded in C++/QT/OpenGL, in the Microsoft Visual Studio 2017.
+A tool for visualizing MD data coded in C++/QT/OpenGL and the Microsoft Visual Studio 2017.
 
-Requirements:
+Build requirements:
 Microsoft Visual Studio 2017
 QT5.0
 
 
 Build:
-open the solution VisAtom2017/VisAtom2017.sln in VS
-run build
-the excutable, VisAtom2017.exe, will be generated in VisAtom2020\VisAtom2017\x64\Release 
+open the solution VisAtom2017/VisAtom2017.sln in VS and run build. The excutable, VisAtom2017.exe, will be generated in VisAtom2017\x64\Release 
+
+Run:
+To run outof VS envirenment, a few QT dynamic libraries (see in Dependence directory)  are needed. Copy the excutable and the dependence DLLs to the working directory.
+
+
+Format of the configurations:
+The atomic configurations are stored in multiple columes, or generated by mdpscu package (see qhou-scu/msmpscu).
+Examples of configuration files can be found in example-data.
+
+
 
-To run outof VS envirenment:
-A few QT dynamic libraries are needed. Copy the excutable and the dependence DLL to the same working directory.

VISATOMSRC/VisAtomVisualizingPolicy.cpp

@@ -84,7 +84,7 @@ VisAtomVisualizingPolicy::VisAtomVisualizingPolicy()
 
        m_geomStyle = GEOM_STYLE_ATOM | GEOM_STYLE_3D; //|GEOM_STYLE_PROJECT;
        //display property of atoms in the subsample
-	   m_shapeStyle= SHAPE_STYLE_DOT;
+	   m_shapeStyle= SHAPE_STYLE_SOLID;
 	   m_radius    = 0.5f;
 	   m_unifyradiu = 1;
 

VisAtom2017/VisAtom2017.ui

@@ -7,7 +7,7 @@
     <x>0</x>
     <y>0</y>
     <width>1227</width>
-    <height>762</height>
+    <height>832</height>
    </rect>
   </property>
   <property name="sizePolicy">
@@ -110,7 +110,7 @@
      <x>0</x>
      <y>0</y>
      <width>1227</width>
-     <height>23</height>
+     <height>26</height>
     </rect>
    </property>
    <widget class="QMenu" name="menu_File">
@@ -234,8 +234,8 @@
    </property>
    <property name="minimumSize">
     <size>
-     <width>314</width>
-     <height>667</height>
+     <width>362</width>
+     <height>701</height>
     </size>
    </property>
    <property name="maximumSize">
@@ -2507,8 +2507,8 @@
    </property>
    <property name="minimumSize">
     <size>
-     <width>282</width>
-     <height>559</height>
+     <width>343</width>
+     <height>635</height>
     </size>
    </property>
    <property name="maximumSize">
@@ -2583,7 +2583,7 @@
                <string>Dot</string>
               </property>
               <property name="checked">
-               <bool>true</bool>
+               <bool>false</bool>
               </property>
              </widget>
             </item>
@@ -2592,6 +2592,9 @@
               <property name="text">
                <string>Solid sphere</string>
               </property>
+              <property name="checked">
+               <bool>true</bool>
+              </property>
              </widget>
             </item>
             <item row="1" column="0">