ci: install rsync #29
Workflow file for this run
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| # yamllint disable | |
| --- | |
| #--------------------------------------------------------------------------------------------------- | |
| env: | |
| TEST_TIMING_OPTION: "" # Set the option if local test should be timed or not. Default is off. | |
| PYTHON_PACKAGE_MANAGER: "conda" # Python package manager to create the python environments | |
| name: github_ci | |
| on: [push] | |
| jobs: | |
| run_tests: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ghcr.io/4c-multiphysics/4c:latest | |
| options: --user root --env OMPI_ALLOW_RUN_AS_ROOT=1 --env OMPI_ALLOW_RUN_AS_ROOT_CONFIRM=1 | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| - name: build | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y rsync | |
| echo /home/user/4C | |
| ls /home/user/4C | |
| echo /home/user/4C/tests | |
| ls /home/user/4C/tests | |
| echo /home/user/4C/tests/input_files | |
| ls /home/user/4C/tests/input_files | |
| ln -s /home/user/4C/build/4C config/4C | |
| ls config/ | |
| mpirun --bind-to none -np 2 config/4C /home/user/4C/tests/input_files/solid_runtime_hex8.dat out | |
| /usr/bin/mpirun --bind-to none -np 2 config/4C /home/user/4C/tests/input_files/solid_runtime_hex8.dat out | |
| $PYTHON_PACKAGE_MANAGER env create -f environment.yml | |
| $PYTHON_PACKAGE_MANAGER activate queens | |
| pip install -e .[develop] | |
| $PYTHON_PACKAGE_MANAGER env export > pipeline_conda_environment.yml | |
| $PYTHON_PACKAGE_MANAGER list | |
| #- name: codechecks | |
| #run: | | |
| # $PYTHON_PACKAGE_MANAGER activate queens | |
| # isort --check-only queens tests > track_isort.txt 2>&1 | |
| # black --check queens tests > track_black.txt 2>&1 | |
| # pylint --rcfile=.pylintrc_ci queens tests | tee track_pylint.txt 2>&1 | |
| # pylint queens tests --rcfile=.pylintrc --output-format=json:pylint_warnings.json --fail-under 0 | |
| # python .gitlab/pipeline_utils/code_quality_creator.py pylint_warnings.json | |
| # pydocstyle --match-dir='^(?!.*test).*$' queens > track_pydocstyle.txt 2>&1 | |
| - name: tests | |
| run: | | |
| $PYTHON_PACKAGE_MANAGER activate queens | |
| pytest -v -m "unit_tests or integration_tests or integration_tests_fourc" --cov --cov-report=term --cov-report=html:html_coverage_report --cov-report=xml:xml_coverage_report.xml $TEST_TIMING_OPTION --color=yes --junitxml=test_junit.xml |