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Add R CMD checks #49

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Jan 9, 2025
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1 change: 1 addition & 0 deletions .Rbuildignore
Original file line number Diff line number Diff line change
Expand Up @@ -12,3 +12,4 @@ README.Rmd
cran-comments.md
.Rprofile
meta_data.yaml
^\.github$
1 change: 1 addition & 0 deletions .github/.gitignore
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@@ -0,0 +1 @@
*.html
51 changes: 51 additions & 0 deletions .github/workflows/R-CMD-check.yaml
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# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
on:
push:
branches: [main, master]
pull_request:

name: R-CMD-check.yaml

permissions: read-all

jobs:
R-CMD-check:
runs-on: ${{ matrix.config.os }}

name: ${{ matrix.config.os }} (${{ matrix.config.r }})

strategy:
fail-fast: false
matrix:
config:
- {os: macos-latest, r: 'release'}
- {os: windows-latest, r: 'release'}
- {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'}
- {os: ubuntu-latest, r: 'release'}
- {os: ubuntu-latest, r: 'oldrel-1'}

env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
R_KEEP_PKG_SOURCE: yes

steps:
- uses: actions/checkout@v4

- uses: r-lib/actions/setup-pandoc@v2

- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
http-user-agent: ${{ matrix.config.http-user-agent }}
use-public-rspm: true

- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::rcmdcheck
needs: check

- uses: r-lib/actions/check-r-package@v2
with:
upload-snapshots: true
build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'
4 changes: 4 additions & 0 deletions README.Rmd
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Expand Up @@ -32,6 +32,10 @@ pkg_version <- read.dcf("DESCRIPTION", fields = "Version")[1, 1]
[![version](https://img.shields.io/static/v1.svg?label=github.com&message=v.`r I(pkg_version)`&color=ff69b4)](https://r-world-devs.github.io/cohortBuilder/)
[![lifecycle](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)

<!-- badges: start -->
[![R-CMD-check](https://github.com/r-world-devs/cohortBuilder/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/r-world-devs/cohortBuilder/actions/workflows/R-CMD-check.yaml)
<!-- badges: end -->

## Overview

`cohortBuilder` provides common API for creating cohorts on multiple data sources,
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1 change: 1 addition & 0 deletions cohortBuilder.Rproj
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@@ -1,4 +1,5 @@
Version: 1.0
ProjectId: 86d4b524-9877-4ef1-9f69-edd64a305be5

RestoreWorkspace: Default
SaveWorkspace: Default
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