replace _ with - in config, use . instead of - for stimela cab names

pfb/parser/cgopts.yml

@@ -1,25 +1,25 @@
-cg_tol:
+cg-tol:
   dtype: float
   default: 1e-3
   info: 'Tolreance of conjugate gradient algorithm'
   abbreviation: cgtol
-cg_maxit:
+cg-maxit:
   dtype: int
   default: 150
   info: 'Maximum iterations for conjugate gradient algorithm'
   abbreviation: cgmaxit
-cg_minit:
+cg-minit:
   dtype: int
   default: 10
   info: 'Minimum iterations for conjugate gradient algorithm'
   abbreviation: cgminit
-cg_verbose:
+cg-verbose:
   dtype: int
   default: 1
   info: 'Verbosity of conjugate gradient algorithm. Set to > 1 for \
         debugging, 0 for silence'
   abbreviation: cgverb
-cg_report_freq:
+cg-report-freq:
   dtype: int
   default: 10
   info: 'Report frequency of conjugate gradient algorithm'

pfb/parser/clean.yaml

@@ -20,23 +20,23 @@ inputs:
     default: 1
     info:
       Perform dilation followed by erosion with structure element of this width
-  fits_mfs:
+  fits-mfs:
     dtype: bool
     default: true
     info:
       Output MFS fits files
-  fits_cubes:
+  fits-cubes:
     dtype: bool
     default: false
     info:
       Output fits cubes
-  mop_flux:
+  mop-flux:
     dtype: bool
     default: true
     info:
       Trigger PCG based flux mop if minor cycle stalls,
       the final threshold is reached or on the final iteration.
-  mop_gamma:
+  mop-gamma:
     dtype: float
     default: 0.65
     info:
@@ -65,25 +65,25 @@ inputs:
     abbreviation: gamma
     info:
       Minor loop gain
-  peak_factor:
+  peak-factor:
     dtype: float
     default: 0.15
     abbreviation: pf
     info:
       Peak factor
-  sub_peak_factor:
+  sub-peak-factor:
     dtype: float
     default: 0.75
     abbreviation: spf
     info:
       Peak factor of sub-minor loop
-  minor_maxit:
+  minor-maxit:
     dtype: int
     default: 50
     abbreviation: mmaxit
     info:
       Maximum number of PSF convolutions between major cycles
-  subminor_maxit:
+  subminor-maxit:
     dtype: int
     default: 1000
     abbreviation: smmaxit
@@ -95,38 +95,38 @@ inputs:
     abbreviation: verb
     info:
       Verbosity level. Set to 2 for maximum verbosity, 0 for silence
-  report_freq:
+  report-freq:
     dtype: int
     default: 10
     abbreviation: rf
     info:
       Report frequency for minor cycles
-  cg_tol:
+  cg-tol:
     dtype: float
     default: 1e-2
     abbreviation: cgtol
     info:
       Tolreance of conjugate gradient algorithm
-  cg_maxit:
+  cg-maxit:
     dtype: int
     default: 100
     abbreviation: cgmaxit
     info:
       Maximum iterations for conjugate gradient algorithm
-  cg_minit:
+  cg-minit:
     dtype: int
     default: 1
     abbreviation: cgminit
     info:
       Minimum iterations for conjugate gradient algorithm
-  cg_verbose:
+  cg-verbose:
     dtype: int
     default: 1
     abbreviation: cgverb
     info:
       Verbosity of conjugate gradient algorithm.
       Set to > 1 for debugging, 0 for silence
-  cg_report_freq:
+  cg-report_freq:
     dtype: int
     default: 100
     abbreviation: cgrf
@@ -137,7 +137,7 @@ inputs:
     default: true
     info:
       Ensure residual decreases at every iteration
-  memory_greedy:
+  memory-greedy:
     dtype: bool
     default: false
     info:

pfb/parser/degrid.yaml

@@ -11,7 +11,7 @@ inputs:
     abbreviation: mds
     info:
       Path to the mds that needs to be degridded
-  model_column:
+  model-column:
     dtype: str
     default: MODEL_DATA
     info:
@@ -23,14 +23,14 @@ inputs:
     info:
       Imaging products to degrid. Options are I, Q, U, V.
       Only single Stokes products are currently supported.
-  integrations_per_image:
+  integrations-per-image:
     dtype: int
     default: -1
     abbreviation: ipi
     info:
       Number of time integrations corresponding to each image.
       Default -1 (equivalently 0 or None) implies degrid per scan.
-  channels_per_image:
+  channels-per-image:
     dtype: int
     abbreviation: cpi
     default: -1

pfb/parser/dist.yml

@@ -1,4 +1,4 @@
-host_address:
+host-address:
   dtype: str
   abbreviation: ha
   info:
@@ -12,7 +12,7 @@ nworkers:
   info:
     Number of worker processes.
     Use with distributed scheduler.
-nthreads_dask:
+nthreads-dask:
   dtype: int
   default: 1
   abbreviation: ntd

pfb/parser/fastim.yaml

@@ -20,7 +20,7 @@ inputs:
     info:
       List of FIELD_ID's to image. Defaults to all.
       Input as string eg. '[0,1,2]' if running from CLI
-  freq_range:
+  freq-range:
     dtype: str
     info:
       Frequency range to image in Hz.
@@ -34,48 +34,48 @@ inputs:
     dtype: Optional[List[any]]
     info:
       Rephase all images to this radec specified in radians
-  data_column:
+  data-column:
     dtype: str
     default: DATA
     abbreviation: dc
     info:
       Data column to image. Must be the same across MSs
-  weight_column:
+  weight-column:
     dtype: str
     abbreviation: wc
     info:
       Column containing natural weights. Must be the same across MSs
-  sigma_column:
+  sigma-column:
     dtype: str
     abbreviation: sc
     info:
       Column containing standard devations.
       Will be used to initialise natural weights if detected.
       Must be the same across MSs
-  flag_column:
+  flag-column:
     dtype: str
     default: FLAG
     abbreviation: fc
     info:
       Column containing data flags. Must be the same across MSs
-  gain_table:
+  gain-table:
     dtype: List[str]
     info:
       Path to Quartical gain table containing NET gains.
       There must be a table for each MS and glob(ms) and glob(gt) should match up
-  gain_term:
+  gain-term:
     dtype: str
     default: NET
     info:
       Which gain term to use. Default is NET
-  integrations_per_image:
+  integrations-per-image:
     dtype: int
     abbreviation: ipi
     default: -1
     info:
       Number of time integrations per image.
       Default (-1, 0, None) -> dataset per scan.
-  channels_per_image:
+  channels-per-image:
     dtype: int
     abbreviation: cpi
     default: -1
@@ -90,23 +90,23 @@ inputs:
       - double
     info:
       Gridding precision
-  bda_decorr:
+  bda-decorr:
     dtype: float
     default: 1.0
     info:
       BDA decorrelation factor.
       Only has an effect if less than one
-  beam_model:
+  beam-model:
     dtype: str
     info:
       Beam model to use
-  max_field_of_view:
+  max-field-of-view:
     dtype: float
     abbreviation: fov
     default: 3.0
     info:
       Field of view in degrees
-  chan_average:
+  chan-average:
     dtype: int
     default: 1
     info:

pfb/parser/forward.yaml

@@ -26,17 +26,17 @@ inputs:
     default: 1.0
     info:
       Step size of update
-  use_psf:
+  use-psf:
     dtype: bool
     default: true
     info:
       Whether to approximate the Hessian as a convolution by the PSF
-  fits_mfs:
+  fits-mfs:
     dtype: bool
     default: true
     info:
       Output MFS fits files
-  fits_cubes:
+  fits-cubes:
     dtype: bool
     default: false
     info:

pfb/parser/fwdbwd.yaml

@@ -6,7 +6,7 @@ inputs:
     - cgopts.yml
     - dist.yml
     - out.yml
-  model_name:
+  model-name:
     dtype: str
     abbreviation: mname
     default: MODEL
@@ -52,7 +52,7 @@ inputs:
     abbreviation: sig21
     info:
       Wavelet thresholding level
-  l1reweight_from:
+  l1reweight-from:
     dtype: int
     default: 5
     info:
@@ -90,15 +90,15 @@ inputs:
     info:
       Tolerance at which to terminate algorithm.
       Will stop when norm(x-xp)/norm(x) < tol
-  fits_mfs:
+  fits-mfs:
     dtype: bool
     default: true
     info: "Output MFS fits files"
-  fits_cubes:
+  fits-cubes:
     dtype: bool
     default: false
     info: "Output fits cubes"
-  memory_greedy:
+  memory-greedy:
     dtype: bool
     default: false
     info: