Code

Clean up schema and dependencies #114

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landmanbester merged 52 commits intomainratt-ru/pfb-imaging:mainfrom outputsratt-ru/pfb-imaging:outputsCopy head branch name to clipboardOct 31, 2024

+1,554-1,263

Commits

Commits on Sep 4, 2024

• set dask logging level when setting up client

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• remove exitstack from grid worker

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• use built in numba.set_num_threads to set the number of threads to use instead of manual version

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• remove QuartiCal dependency

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• set nthreads=1 in test suite

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• add bokeh dependency and don't lose protocol in output-filename

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Commits on Sep 5, 2024

• catch and raise errors returned by futures

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• report numba cache dir for validation

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Commits on Sep 9, 2024

• more general hess_psf operator

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• fix failing tests. Report timings in pcg. Plot residual histograms after reweighting

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Commits on Sep 10, 2024

• optimise simple task for large arrays

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• compare cube to per slice hess

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Commits on Sep 11, 2024

• explicitly check if ac_iter is empty and break out of loop if it is

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Commits on Sep 13, 2024

• add direction dependent predict

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• fix typo in degrid

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• drop last two axes of wcs before rendering region to mask

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• transpose region mask in degridder

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• stokes2vis return None when all data are flagged in a chunk

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Commits on Sep 16, 2024

• Merge branch 'ddpredict' into outputs

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• fix typo in pcg for fluxmop

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Commits on Sep 17, 2024

• don't drop DIRTY in pcg for fluxmop

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• Merge branch 'ddpredict' into outputs

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• don't strip protocall in basename

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• don't strip protocall in basename also in fluxmop

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• optionally use stack.enter_context

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• add regions dependency

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• report load location in xds_from_url call

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• keep protocol in tact when globbing from object stores

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• use s3fs directly with pickle instead of boto3

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• explicitly resize_thread_pool in gridding workers

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Commits on Sep 18, 2024

• more consistent use of xds_from_url

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Commits on Sep 19, 2024

• make wgridder calls more verbose

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• parallel norm_diff and print sara timings in fractions

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• time residual steps

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Commits on Sep 20, 2024

• attempt to write to zarr in separate thread

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• don't write unnecessary data vars during major cycle

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Commits on Sep 21, 2024

• better use of numba in pcg

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Commits on Sep 23, 2024

• use --model-name and --residual-name parameters in restore worker

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• Merge branch 'ddpredict' into outputs

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• revert numba updates in pcg

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Commits on Sep 25, 2024

• don't use exitstack in degrid

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• Merge branch 'ddpredict' into outputs

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Commits on Sep 26, 2024

• pass jit options correctly to overload

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• resize ducc thread pool in comps2vis

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Commits on Oct 10, 2024

• report mean and var ressq before and after reweighting

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Commits on Oct 11, 2024

• make beam computational optional in grid worker

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Commits on Oct 14, 2024

• allow missing antennas by relabelling ant1 and ant2 by index

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Commits on Oct 16, 2024

• downweight extrapolated edges in model2comps

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• don't select out frow before antenna sanity check in stokes2vis

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Commits on Oct 29, 2024

• add outputs and read degrid chan mapping from dds by default

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Commits on Oct 30, 2024

• rename fluxmop -> fluxtractor

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• only print timings if verbosity larger than 1

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