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[AUTO] Update data #194

Merged
merged 2 commits into from
Jun 28, 2024
Merged

[AUTO] Update data #194

merged 2 commits into from
Jun 28, 2024

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PietrH-bot
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Brief description

This is an automatically generated PR.
The following steps are all automatically performed:

  • Fetch raw data
  • Map raw data to DwC standard and save the output in ./data/processed
  • Get an overview of the changes
  • Run some tests, e.g. check the uniqueness of occurrenceID, check that all occurrences have a eventID and scientificName, ...

Note to the reviewer: the workflow automation is still in a development phase. Please, check the output thoroughly before merging to main. In case, improve the data fecthing fetch_data.Rmd, the mapping dwc_mapping.Rmd, both in ./src or the GitHub workflows fetch-data.yaml and mapping_and_testing.yaml in ./.github/workflows.

Files changed:
M	data/processed/occurrence.csv
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PietrH commented Jun 28, 2024

New species: Procambarus

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PietrH commented Jun 28, 2024

Output record for new species:

type language license rightsHolder datasetID institutionCode datasetName basisOfRecord eventID occurrenceID recordedBy organismQuantity organismQuantityType occurrenceStatus samplingProtocol samplingEffort eventDate countryCode municipality verbatimLatitude verbatimLongitude verbatimCoordinateSystem verbatimSRS decimalLatitude decimalLongitude geodeticDatum coordinateUncertaintyInMeters scientificName kingdom taxonRank
Event en http://creativecommons.org/publicdomain/zero/1.0/ RATO https://doi.org/10.15468/fw2rbx RATO RATO - Daily operations commissioned by the province East Flanders, Belgium HumanObservation 691911045 {6F91B89C-EFDC-4F02-9B25-DD62CC108236} RATO NA NA present NA NA 2024-06-13 13:26:09 BE Ronse 160672.1 96933.33 Lambert coordinates Belgian Datum 1972 50.75415 3.61671 WGS84 30 Procambarus Animalia genus

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PietrH commented Jun 28, 2024

Verbatim: Rivierkreeft

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PietrH commented Jun 28, 2024

871 new records. 1 new species.

10 species:

scientificName n
Rattus norvegicus 760
Ondatra zibethicus 50
Vespa velutina 28
Heracleum mantegazzianum 15
Trachemys scripta 8
Martes foina 5
Gallus gallus domesticus 2
Castor fiber 1
Ludwigia grandiflora 1
Procambarus 1

On 5 days:

date n
2024-06-11 243
2024-06-12 217
2024-06-14 143
2024-06-13 135
2024-06-10 133

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PietrH commented Jun 28, 2024

No deleted records

all(reference$occurrenceID %in% current$occurrenceID)

@PietrH PietrH merged commit 200b65c into main Jun 28, 2024
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@PietrH PietrH deleted the automatic-update-2024-06-28T13-01-20Z branch June 28, 2024 14:04
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2 participants