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Try to resolve intermittant conda-related CI failures #62

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Try to resolve intermittant conda-related CI failures

Try to resolve intermittant conda-related CI failures #62

Triggered via pull request November 11, 2024 11:19
@matthuskamatthuska
opened #112
93-fix-intermittant-conda-related-failures-of-github-actions
Status Failure
Total duration 1m 19s
Artifacts –

dryrun.yml

on: pull_request
Matrix: test
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23 errors and 12 warnings
Dry run fasta-conda-nf_latest pipeline test
Process completed with exit code 1.
Dry run fasta-conda-nf_23.04.1 pipeline test
The job was canceled because "latest_fasta_conda_3_9" failed.
Dry run fasta-conda-nf_23.04.1 pipeline test
The operation was canceled.
Dry run nanopore-docker-nf_23.04.1 pipeline test
The job was canceled because "latest_fasta_conda_3_9" failed.
Dry run nanopore-docker-nf_23.04.1 pipeline test
The operation was canceled.
Dry run fasta-docker-nf_23.04.1 pipeline test
The job was canceled because "latest_fasta_conda_3_9" failed.
Dry run fasta-docker-nf_23.04.1 pipeline test
The operation was canceled.
Dry run nanopore-conda-nf_latest pipeline test
The job was canceled because "latest_fasta_conda_3_9" failed.
Dry run nanopore-conda-nf_latest pipeline test
The operation was canceled.
Dry run fasta-docker-nf_latest pipeline test
The job was canceled because "latest_fasta_conda_3_9" failed.
Dry run fasta-docker-nf_latest pipeline test
The operation was canceled.
Dry run illumina-docker-nf_23.04.1 pipeline test
The job was canceled because "latest_fasta_conda_3_9" failed.
Dry run illumina-docker-nf_23.04.1 pipeline test
The operation was canceled.
Dry run nanopore-conda-nf_23.04.1 pipeline test
The job was canceled because "latest_fasta_conda_3_9" failed.
Dry run nanopore-conda-nf_23.04.1 pipeline test
The operation was canceled.
Dry run illumina-conda-nf_latest pipeline test
The job was canceled because "latest_fasta_conda_3_9" failed.
Dry run illumina-conda-nf_latest pipeline test
The operation was canceled.
Dry run illumina-conda-nf_23.04.1 pipeline test
The job was canceled because "latest_fasta_conda_3_9" failed.
Dry run illumina-conda-nf_23.04.1 pipeline test
The operation was canceled.
Dry run nanopore-docker-nf_latest pipeline test
The job was canceled because "latest_fasta_conda_3_9" failed.
Dry run nanopore-docker-nf_latest pipeline test
The operation was canceled.
Dry run illumina-docker-nf_latest pipeline test
The job was canceled because "latest_fasta_conda_3_9" failed.
Dry run illumina-docker-nf_latest pipeline test
The operation was canceled.
Dry run fasta-conda-nf_latest pipeline test
/usr/share/miniconda/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Dry run fasta-conda-nf_latest pipeline test
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
Dry run fasta-conda-nf_23.04.1 pipeline test
/usr/share/miniconda/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Dry run fasta-conda-nf_23.04.1 pipeline test
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
Dry run nanopore-conda-nf_latest pipeline test
/usr/share/miniconda/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Dry run nanopore-conda-nf_latest pipeline test
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
Dry run nanopore-conda-nf_23.04.1 pipeline test
/usr/share/miniconda/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Dry run nanopore-conda-nf_23.04.1 pipeline test
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
Dry run illumina-conda-nf_latest pipeline test
/usr/share/miniconda/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Dry run illumina-conda-nf_latest pipeline test
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
Dry run illumina-conda-nf_23.04.1 pipeline test
/usr/share/miniconda/lib/python3.12/site-packages/conda/base/context.py:198: FutureWarning: Adding 'defaults' to channel list implicitly is deprecated and will be removed in 25.3. To remove this warning, please choose a default channel explicitly with conda's regular configuration system, e.g. by adding 'defaults' to the list of channels: conda config --add channels defaults For more information see https://docs.conda.io/projects/conda/en/stable/user-guide/configuration/use-condarc.html deprecated.topic(
Dry run illumina-conda-nf_23.04.1 pipeline test
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.