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add pacbio specific minimap2 parameter and input option #71

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add pacbio specific minimap2 parameter and input option

add pacbio specific minimap2 parameter and input option #71

Run time

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Job Run time
Dry run fasta-docker-nf_23.04.1 pipeline test
1m 38s
Dry run fasta-conda-nf_23.04.1 pipeline test
2m 20s
Dry run illumina-docker-nf_23.04.1 pipeline test
2m 43s
Dry run illumina-conda-nf_23.04.1 pipeline test
4m 25s
Dry run nanopore-docker-nf_23.04.1 pipeline test
1m 27s
Dry run nanopore-conda-nf_23.04.1 pipeline test
2m 59s
Dry run fasta-docker-nf_latest pipeline test
1m 23s
Dry run fasta-conda-nf_latest pipeline test
2m 21s
Dry run illumina-docker-nf_latest pipeline test
2m 53s
Dry run illumina-conda-nf_latest pipeline test
4m 56s
Dry run nanopore-docker-nf_latest pipeline test
1m 30s
Dry run nanopore-conda-nf_latest pipeline test
2m 48s
31m 23s