feat!: bam header to_hashmap method now returns a result in order to deal with header parsing issues #875
Annotations
2 errors and 16 warnings
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Test:
src/bam/mod.rs#L3000
type annotations needed
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Test
The process '/home/runner/.cargo/bin/cargo' failed with exit code 101
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The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions-rs/[email protected], Swatinem/[email protected], actions-rs/cargo@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2, actions-rs/[email protected], Swatinem/[email protected], actions-rs/cargo@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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Test:
src/bam/mod.rs#L1395
unnecessary parentheses around function argument
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Test:
src/bcf/record.rs#L134
field `buffer` is never read
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Test:
src/tbx/mod.rs#L94
field `hts_format` is never read
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Test:
src/bam/record.rs#L140
the type `hts_sys::bam1_t` does not permit being left uninitialized
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Test
`rust-htslib` (lib) generated 4 warnings (run `cargo fix --lib -p rust-htslib` to apply 1 suggestion)
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Test:
src/bam/mod.rs#L3031
variable does not need to be mutable
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Test
`rust-htslib` (lib test) generated 2 warnings (1 duplicate)
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Install stable toolchain
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Install stable toolchain
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Install stable toolchain
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Install stable toolchain
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Run Swatinem/[email protected]
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Run Swatinem/[email protected]
The `save-state` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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Run Swatinem/[email protected]
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
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