Automated deployment to update containers 2024-11-01

singularityhub · Nov 1, 2024 · 07514a1 · 07514a1
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commit 07514a1
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Showing 14 changed files with 33 additions and 16 deletions.
diff --git a/nvcr.io/hpc/quantum_espresso/container.yaml b/nvcr.io/hpc/quantum_espresso/container.yaml
@@ -5,12 +5,13 @@ description: Quantum ESPRESSO is an integrated suite of Open-Source computer cod
   for electronic-structure calculations and materials modeling at the nanoscale based
   on density-functional theory, plane waves, and pseudopotentials.
 latest:
-  qe-7.1: sha256:e525848fd411302f1e941b34f145a988a0ea2d300e14c93d3deec291c4c88edc
+  qe-7.3.1: sha256:02bf802756ab383553298b4e96be2b8daecfcbf147b1f929a8253c2c011ceccb
 tags:
   v6.7: sha256:fdcea13eec98f48af813f172be42a40adf4e856d07cfb4ee1fc584d5c4a8f0f9
   qe-6.8: sha256:1db6a3eae9baa8cbb6c72f227c14d48fd8a8b2548f021c10764608a321525de8
   qe-7.0: sha256:e117f9df9868b7d7908fabc951719d8bf4a450ef7a9a01cf2e0ed5ab3f2b9651
   qe-7.1: sha256:e525848fd411302f1e941b34f145a988a0ea2d300e14c93d3deec291c4c88edc
+  qe-7.3.1: sha256:02bf802756ab383553298b4e96be2b8daecfcbf147b1f929a8253c2c011ceccb
 filter:
 - v*
 features:

diff --git a/quay.io/biocontainers/bactopia-teton/container.yaml b/quay.io/biocontainers/bactopia-teton/container.yaml
@@ -2,14 +2,15 @@ url: https://biocontainers.pro/tools/bactopia-teton
 maintainer: '@vsoch'
 description: singularity registry hpc automated addition for bactopia-teton
 latest:
-  1.1.0--hdfd78af_0: sha256:c62d992316bf99a5a5b087fc88586b954d4c7388ced89d4771cdb3a795d0a409
+  1.1.1--hdfd78af_0: sha256:669fbc7f7b2ac189a0d7947ff055886f9d82036e84cad0893febdaefb02f81ad
 tags:
   1.0.0--hdfd78af_0: sha256:0a05cf3119ab1814fd5b2d044958a053f13fff7645c74816a85e44d9c844f8f0
   1.0.1--hdfd78af_0: sha256:c49b1ad5dfe6dd195a6400b53c7cbf1f3d8eaa4b3a3bbc9ba5d2e034eb8a9a75
   1.0.2--hdfd78af_0: sha256:3028f3ea7362bdf41dbeb8842640eea36216db7f3b263511a92761cae2fccdbc
   1.0.4--hdfd78af_0: sha256:cc2dc221df2dc67dcc02b5d75a45a8546288b2d320ef9e54137fc80176feaa2f
   1.1.0--hdfd78af_0: sha256:c62d992316bf99a5a5b087fc88586b954d4c7388ced89d4771cdb3a795d0a409
   1.0.5--hdfd78af_0: sha256:399a4b1e4315c20a27743a4f873fb4411cae5b66d05a8e300393f402860f2209
+  1.1.1--hdfd78af_0: sha256:669fbc7f7b2ac189a0d7947ff055886f9d82036e84cad0893febdaefb02f81ad
 docker: quay.io/biocontainers/bactopia-teton
 aliases:
   alpha_diversity.py: /usr/local/bin/alpha_diversity.py

diff --git a/quay.io/biocontainers/gempipe/container.yaml b/quay.io/biocontainers/gempipe/container.yaml
@@ -2,11 +2,14 @@ url: https://biocontainers.pro/tools/gempipe
 maintainer: '@vsoch'
 description: singularity registry hpc automated addition for gempipe
 latest:
-  1.35.3--pyhdfd78af_0: sha256:caf1dd7687e098ee35b25c8c9843b3b9b6eb0d20b6674acf612fa8d1544638ab
+  1.37.0--pyhdfd78af_0: sha256:e2f0e80ee3824c17abe2f6e383690d9a423a5d21afa5607fd369fceadb380c54
 tags:
   1.33.4--pyhdfd78af_0: sha256:d1095e4427fc39b5629de75d05841e1249df041c17af08c8bec8b0361c6eaa7b
   1.34.2--pyhdfd78af_0: sha256:1f1f035b5645727e4c983f792c3a61ed0bcc768d53227d2bc9af94e7caff89b3
   1.35.3--pyhdfd78af_0: sha256:caf1dd7687e098ee35b25c8c9843b3b9b6eb0d20b6674acf612fa8d1544638ab
+  1.37.0--pyhdfd78af_0: sha256:e2f0e80ee3824c17abe2f6e383690d9a423a5d21afa5607fd369fceadb380c54
+  1.36.0--pyhdfd78af_0: sha256:90ca61bb1737255ba1f2537966711e7809db529d53c287394b89d9efe09fd428
+  1.35.5--pyhdfd78af_0: sha256:4ee4efd02a4fa6b74efce6245e662fa78e90418a5b328b5d668a0e803475df16
 docker: quay.io/biocontainers/gempipe
 aliases:
   PF00225_full.blocks.txt: /usr/local/bin/PF00225_full.blocks.txt

diff --git a/quay.io/biocontainers/hmftools-redux/container.yaml b/quay.io/biocontainers/hmftools-redux/container.yaml
@@ -2,9 +2,10 @@ url: https://biocontainers.pro/tools/hmftools-redux
 maintainer: '@vsoch'
 description: singularity registry hpc automated addition for hmftools-redux
 latest:
-  1.0_beta--hdfd78af_0: sha256:cd8b9582cdc782c83332b0d4b4c532f617c41d19d0725426413de301cd5da6ed
+  1.0_beta--hdfd78af_2: sha256:bc04457a9957c2d9f07e4de2209114062341ec65a98b7370c70bd400abedd994
 tags:
   1.0_beta--hdfd78af_0: sha256:cd8b9582cdc782c83332b0d4b4c532f617c41d19d0725426413de301cd5da6ed
+  1.0_beta--hdfd78af_2: sha256:bc04457a9957c2d9f07e4de2209114062341ec65a98b7370c70bd400abedd994
 docker: quay.io/biocontainers/hmftools-redux
 aliases:
   redux: /usr/local/bin/redux

diff --git a/quay.io/biocontainers/hsdfinder/container.yaml b/quay.io/biocontainers/hsdfinder/container.yaml
@@ -2,10 +2,11 @@ url: https://biocontainers.pro/tools/hsdfinder
 maintainer: '@vsoch'
 description: singularity registry hpc automated addition for hsdfinder
 latest:
-  1.1.0--hdfd78af_0: sha256:71c58b2eda3d1d860405ec3bd0c6b066436e2a6104cb94fbd01ce66b1d2f2ac7
+  1.1.1--hdfd78af_0: sha256:f5e3b69f66bcb7da1344d11979c3f14bf376eb806430c173ea2565ddd4620b1d
 tags:
   1.0.0--hdfd78af_0: sha256:6af3c4284d891b246ca3430b6cdda32a8ec959a464f9aeba62da9216e05f6bb1
   1.1.0--hdfd78af_0: sha256:71c58b2eda3d1d860405ec3bd0c6b066436e2a6104cb94fbd01ce66b1d2f2ac7
+  1.1.1--hdfd78af_0: sha256:f5e3b69f66bcb7da1344d11979c3f14bf376eb806430c173ea2565ddd4620b1d
 docker: quay.io/biocontainers/hsdfinder
 aliases:
   KO_database.keg: /usr/local/bin/KO_database.keg

diff --git a/quay.io/biocontainers/hybracter/container.yaml b/quay.io/biocontainers/hybracter/container.yaml
@@ -2,7 +2,7 @@ url: https://biocontainers.pro/tools/hybracter
 maintainer: '@vsoch'
 description: singularity registry hpc automated addition for hybracter
 latest:
-  0.9.0--pyhdfd78af_0: sha256:34b8a73b90bd805fe7fc44e2eea8ed735d508f64f110c42032adea20b28238c0
+  0.10.0--pyhdfd78af_0: sha256:b4871bc64c66b60074e7de4e61c22601bb8358402919381eeb09f99e8cee4734
 tags:
   0.1.2--pyhdfd78af_0: sha256:980cfcbbad71ce1742a56685146167b3b32b3df12e14d8a05d5346eb0a5a2c12
   0.2.1--pyhdfd78af_0: sha256:b76818af984f2d2c1795b9a6e62ff32a02eb88dbbd345f2e191f56e3b463f8ea
@@ -14,6 +14,8 @@ tags:
   0.7.3--pyhdfd78af_0: sha256:ed62495748bb5bead56f7aa3cb368328caa5c1186ff647cfa3b31499c1e38c16
   0.9.0--pyhdfd78af_0: sha256:34b8a73b90bd805fe7fc44e2eea8ed735d508f64f110c42032adea20b28238c0
   0.8.0--pyhdfd78af_0: sha256:5a2d53d75454b9cc87e04618833bf85b43241fb1c99b4cd64a964def89eb6cc6
+  0.10.0--pyhdfd78af_0: sha256:b4871bc64c66b60074e7de4e61c22601bb8358402919381eeb09f99e8cee4734
+  0.9.1--pyhdfd78af_0: sha256:bd5069f8a8bbebe689f29f17568441fc7f77977e9e30c344ddd14069524465ff
 docker: quay.io/biocontainers/hybracter
 aliases:
   hybracter: /usr/local/bin/hybracter

diff --git a/quay.io/biocontainers/hyphy/container.yaml b/quay.io/biocontainers/hyphy/container.yaml
@@ -2,12 +2,13 @@ url: https://biocontainers.pro/tools/hyphy
 maintainer: '@vsoch'
 description: shpc-registry automated BioContainers addition for hyphy
 latest:
-  2.5.62--h0d74fca_1: sha256:c1334ec0cb099fd3eeadd070a4bebe90d89d9e9ba9dcbebdff85013fc6403a07
+  2.5.63--h0d74fca_0: sha256:89c67de33a8e24b2d2edf699b6be04b3698801a58de30f90d63d239cafb05271
 tags:
   2.5.9--ha076c6e_0: sha256:a84936a03479d9782d991344e44db9539804065e04d9c6850ae911c068b723d3
   2.5.38--h91ae1e9_0: sha256:9f943f4c5c10e4017da77ede652df4b920858fcdc9926a077b426b4fbad18d2a
   2.5.60--h0705fce_0: sha256:b670b6db8c9eca3d1ff98cfe570b2be953c7bfa2de0abbfb10638d6a16ff9dc3
   2.5.61--h0705fce_0: sha256:8e61391e27896771fee920c536a432afb3082a088256388f0f8c57a149276505
   2.5.62--h0705fce_0: sha256:30c12f7c985c372db8296c8eba88e27ecdd98bf7c07da23210265cd379128e41
   2.5.62--h0d74fca_1: sha256:c1334ec0cb099fd3eeadd070a4bebe90d89d9e9ba9dcbebdff85013fc6403a07
+  2.5.63--h0d74fca_0: sha256:89c67de33a8e24b2d2edf699b6be04b3698801a58de30f90d63d239cafb05271
 docker: quay.io/biocontainers/hyphy
diff --git a/quay.io/biocontainers/matchms/container.yaml b/quay.io/biocontainers/matchms/container.yaml
@@ -2,7 +2,7 @@ url: https://biocontainers.pro/tools/matchms
 maintainer: '@vsoch'
 description: shpc-registry automated BioContainers addition for matchms
 latest:
-  0.27.0--pyhdfd78af_0: sha256:25e08859755994ce8d476bdd6c8c39907ae31d00ee076041f33efeb22ae59913
+  0.27.0--pyhdfd78af_1: sha256:30272c2c5b4d42fecf0bdc20b02f868b6ab212df702d7e010691a808c6261de9
 tags:
   0.9.2--pyh5e36f6f_0: sha256:d1a8f1d785b8993724305e4684caae5bc194b9fbb99053883eacfead753f20c0
   0.17.0--pyh7cba7a3_0: sha256:e627c7edc52623413aaaa9a8e0d5ab36745a674a134fc9068ebfca9c2b64fef4
@@ -24,6 +24,7 @@ tags:
   0.25.0--pyhdfd78af_0: sha256:f05c8c314d4bc6fccf6d8587c8eaad653fa77d561a2f82cd03827f6248b37e79
   0.26.4--pyhdfd78af_0: sha256:5de845971b5f9c9f74182675541c2e6e0fc98356136a60cc264bf5fe87febdd1
   0.27.0--pyhdfd78af_0: sha256:25e08859755994ce8d476bdd6c8c39907ae31d00ee076041f33efeb22ae59913
+  0.27.0--pyhdfd78af_1: sha256:30272c2c5b4d42fecf0bdc20b02f868b6ab212df702d7e010691a808c6261de9
 docker: quay.io/biocontainers/matchms
 aliases:
   numba: /usr/local/bin/numba

diff --git a/quay.io/biocontainers/mgikit/container.yaml b/quay.io/biocontainers/mgikit/container.yaml
@@ -2,11 +2,12 @@ url: https://biocontainers.pro/tools/mgikit
 maintainer: '@vsoch'
 description: singularity registry hpc automated addition for mgikit
 latest:
-  0.1.6--h4c94732_0: sha256:80054ccc61bbd83aeb21fe7c41dafb896ef7ac93af84de109a36594908d993e4
+  0.1.7--h4c94732_0: sha256:5435e10072dfe3f17d375e750889c0ef4de1a745682049f0079b1eada73c469f
 tags:
   0.1.5--h4c94732_0: sha256:499811e979978077987761492c5d9d7c3af468b2caaf4ad501035e60580a9bf2
   0.1.5--h4c94732_1: sha256:d38b38c49bae810c354d70b40f481c1574ebbcc96927a3091c8ed7e71c08d471
   0.1.6--h4c94732_0: sha256:80054ccc61bbd83aeb21fe7c41dafb896ef7ac93af84de109a36594908d993e4
+  0.1.7--h4c94732_0: sha256:5435e10072dfe3f17d375e750889c0ef4de1a745682049f0079b1eada73c469f
 docker: quay.io/biocontainers/mgikit
 aliases:
   mgikit: /usr/local/bin/mgikit
diff --git a/quay.io/biocontainers/picard/container.yaml b/quay.io/biocontainers/picard/container.yaml
@@ -2,7 +2,7 @@ url: https://biocontainers.pro/tools/picard
 maintainer: '@vsoch'
 description: shpc-registry automated BioContainers addition for picard
 latest:
-  3.2.0--hdfd78af_0: sha256:0ba3a90a242cfa06362da145df868e92401c1cc8cd85cc08e85c4a5c9e55ed23
+  3.3.0--hdfd78af_0: sha256:8b95c2742d74ccc04ce56af3ca051b9a418a246be48c9af5239f0274409e495d
 tags:
   2.9.2--py36_1: sha256:2aeca0a7a8985abd6e45e97db6f9cc84f1c3b3439573dc484fa7f86e9e443be5
   2.18.23--0: sha256:ae8e2821c8687a78606f17fafb417eea0de1ac75142ef94d428897f5d6b90876
@@ -16,6 +16,7 @@ tags:
   2.26.11--hdfd78af_0: sha256:229d61d04965e797b9f77dbb56d46a14646abb52c7bcdf0c9586c8382f06f851
   2.25.7--hdfd78af_0: sha256:cdd60185fdc3a479ed6cc918e739fefcf28f3f6853c8ec3f0f5cfce09f8258c9
   3.2.0--hdfd78af_0: sha256:0ba3a90a242cfa06362da145df868e92401c1cc8cd85cc08e85c4a5c9e55ed23
+  3.3.0--hdfd78af_0: sha256:8b95c2742d74ccc04ce56af3ca051b9a418a246be48c9af5239f0274409e495d
 docker: quay.io/biocontainers/picard
 aliases:
   picard: /usr/local/bin/picard
diff --git a/quay.io/biocontainers/snakemake-interface-executor-plugins/container.yaml b/quay.io/biocontainers/snakemake-interface-executor-plugins/container.yaml
@@ -2,7 +2,7 @@ url: https://biocontainers.pro/tools/snakemake-interface-executor-plugins
 maintainer: '@vsoch'
 description: singularity registry hpc automated addition for snakemake-interface-executor-plugins
 latest:
-  9.2.0--pyhdfd78af_0: sha256:31462c10724e15a954208e62d26733000f37950b6c7bd0f4065fae1483be427d
+  9.3.2--pyhdfd78af_0: sha256:165cd2bdf56a8c767d96f35cf97729d9fba8a5d49ce9d2115d1ae1203bdc67ae
 tags:
   1.0.1--pyhdfd78af_0: sha256:8b8ed1c92656a706fc8386caea18f534de39fa8bb504e785ecfe97971cace5c3
   5.0.2--pyhdfd78af_0: sha256:1ad0280b34f79c258d0868dd38f2675eb76972a86e57949c69c56e168f9ab8d7
@@ -20,6 +20,7 @@ tags:
   9.0.2--pyhdfd78af_0: sha256:d9b8012f6afa97978e48bb83364fc0323a41cc51b0ccef5055b69d1d35ddd44c
   9.1.1--pyhdfd78af_0: sha256:3508343366bd324cf21d716c166d69d3a21a0091b050ef8fce476334cd79afd8
   9.2.0--pyhdfd78af_0: sha256:31462c10724e15a954208e62d26733000f37950b6c7bd0f4065fae1483be427d
+  9.3.2--pyhdfd78af_0: sha256:165cd2bdf56a8c767d96f35cf97729d9fba8a5d49ce9d2115d1ae1203bdc67ae
 docker: quay.io/biocontainers/snakemake-interface-executor-plugins
 aliases:
   2to3-3.11: /usr/local/bin/2to3-3.11

diff --git a/quay.io/biocontainers/snakemake-storage-plugin-gcs/container.yaml b/quay.io/biocontainers/snakemake-storage-plugin-gcs/container.yaml
@@ -2,12 +2,13 @@ url: https://biocontainers.pro/tools/snakemake-storage-plugin-gcs
 maintainer: '@vsoch'
 description: singularity registry hpc automated addition for snakemake-storage-plugin-gcs
 latest:
-  1.1.1--pyhdfd78af_0: sha256:ce69e4e5a85c0390bea8f4be352acc8af33729777a8e0f30e50c0b295032ceb7
+  1.1.2--pyhdfd78af_0: sha256:16dfb50ca33a93b5801a4071e6642360a84453676ba01ad4a3b794a6595aad3c
 tags:
   0.1.3--pyhdfd78af_0: sha256:54ce99bec39b26e088df29176519f677971eae61d26e71cc4d2624e2df205f10
   0.1.4--pyhdfd78af_0: sha256:cbf27cdec6e2cca45c2d0042d662c03fd1f1e71301c5dbd486c3ed6052ee9bec
   1.0.0--pyhdfd78af_0: sha256:142b8ffb456c00b046eda2208523b50dcc0d74954681c317b8343e304bc506b8
   1.1.1--pyhdfd78af_0: sha256:ce69e4e5a85c0390bea8f4be352acc8af33729777a8e0f30e50c0b295032ceb7
+  1.1.2--pyhdfd78af_0: sha256:16dfb50ca33a93b5801a4071e6642360a84453676ba01ad4a3b794a6595aad3c
 docker: quay.io/biocontainers/snakemake-storage-plugin-gcs
 aliases:
   protoc-24.4.0: /usr/local/bin/protoc-24.4.0

diff --git a/quay.io/biocontainers/tbtamr/container.yaml b/quay.io/biocontainers/tbtamr/container.yaml
@@ -2,10 +2,11 @@ url: https://biocontainers.pro/tools/tbtamr
 maintainer: '@vsoch'
 description: singularity registry hpc automated addition for tbtamr
 latest:
-  0.0.4--pyhdfd78af_1: sha256:5eddf362b8918bf944b72541ea526743083c846d005c19a464692758409ba5e3
+  1.0.2--pyhdfd78af_1: sha256:0c9d6827ab914d47dcc3da87c27085d88cfa25213426487c15d5226699429068
 tags:
   0.0.4--pyhdfd78af_0: sha256:b8b4597e58caac49052a943fa189552d2e84d42301693837ecb748644f162852
   0.0.4--pyhdfd78af_1: sha256:5eddf362b8918bf944b72541ea526743083c846d005c19a464692758409ba5e3
+  1.0.2--pyhdfd78af_1: sha256:0c9d6827ab914d47dcc3da87c27085d88cfa25213426487c15d5226699429068
 docker: quay.io/biocontainers/tbtamr
 aliases:
   csvtk: /usr/local/bin/csvtk

diff --git a/rocker/shiny/container.yaml b/rocker/shiny/container.yaml
@@ -3,7 +3,7 @@ url: https://hub.docker.com/r/rocker/shiny
 maintainer: '@vsoch'
 description: Docker image with R + Shiny.
 latest:
-  4.4.1: sha256:454dfaf0767473b39dcab510f1c129e890443e75f75cb3e95e78a522e26cd6ee
+  4.4.2: sha256:eefe133eb2c1e5c57219d8e1ecf271441bd8f19a966674f5458513ff492bf86d
 tags:
   4.2.2: sha256:5a01f59096c1b86e283cf9756d8badf8f1760a565b82b0c02112f7ffabb81b8b
   3.6.3: sha256:212182dd244edd0380f2f76521f2c10405504b632696852d776402585eb68625
@@ -13,9 +13,10 @@ tags:
   4.3.0: sha256:15990f645e367bc020233dc6b4f929f98c22c2fb5a5413a294e14d5cd1fe3d38
   4.3.1: sha256:c917230d2ebcae772ffae1192e06ba04125a6b512071d9c36d8e7155d4c8667a
   4.3.2: sha256:882ffd767bc97fa310da50137f7539f548978a354b5e9d1e87b0f6741b81a44b
-  4.3.3: sha256:2709f576175f24fc677673345b86ed41f966b231d2fb80fb79f8b7008d4f296b
+  4.3.3: sha256:2552384e06381be996df2cd2d72020bf1c997e929d55e2826a9f9cfbe8d5dc69
   4.4.0: sha256:a76bfc201e36b5da0727d99737a2e7bf0d9df56e812c6fb08774c59f17dac048
-  4.4.1: sha256:454dfaf0767473b39dcab510f1c129e890443e75f75cb3e95e78a522e26cd6ee
+  4.4.1: sha256:c50810df4747090eceb2f94da767ad27ad92dc78f96440577cfb8dbe46431026
+  4.4.2: sha256:eefe133eb2c1e5c57219d8e1ecf271441bd8f19a966674f5458513ff492bf86d
 filter:
 - ^[0-9]+[.][0-9]+[.][0-9]+$
 aliases: