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Automated deployment to update containers 2025-01-20
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26 changes: 26 additions & 0 deletions quay.io/biocontainers/bioconductor-mpac/container.yaml
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url: https://biocontainers.pro/tools/bioconductor-mpac
maintainer: '@vsoch'
description: singularity registry hpc automated addition for bioconductor-mpac
latest:
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tags:
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docker: quay.io/biocontainers/bioconductor-mpac
aliases:
x86_64-conda-linux-gnu.cfg: /usr/local/bin/x86_64-conda-linux-gnu.cfg
idle3.13: /usr/local/bin/idle3.13
pydoc3.13: /usr/local/bin/pydoc3.13
python3.13: /usr/local/bin/python3.13
python3.13-config: /usr/local/bin/python3.13-config
glpsol: /usr/local/bin/glpsol
installBiocDataPackage.sh: /usr/local/bin/installBiocDataPackage.sh
tomlq: /usr/local/bin/tomlq
xq: /usr/local/bin/xq
yq: /usr/local/bin/yq
jq: /usr/local/bin/jq
onig-config: /usr/local/bin/onig-config
hb-info: /usr/local/bin/hb-info
activate-global-python-argcomplete: /usr/local/bin/activate-global-python-argcomplete
python-argcomplete-check-easy-install-script: /usr/local/bin/python-argcomplete-check-easy-install-script
register-python-argcomplete: /usr/local/bin/register-python-argcomplete
tjbench: /usr/local/bin/tjbench
16 changes: 16 additions & 0 deletions quay.io/biocontainers/bioconductor-omicsmlrepor/container.yaml
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url: https://biocontainers.pro/tools/bioconductor-omicsmlrepor
maintainer: '@vsoch'
description: singularity registry hpc automated addition for bioconductor-omicsmlrepor
latest:
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tags:
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docker: quay.io/biocontainers/bioconductor-omicsmlrepor
aliases:
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x86_64-conda-linux-gnu.cfg: /usr/local/bin/x86_64-conda-linux-gnu.cfg
pandoc-server: /usr/local/bin/pandoc-server
glpsol: /usr/local/bin/glpsol
pandoc: /usr/local/bin/pandoc
hb-info: /usr/local/bin/hb-info
tjbench: /usr/local/bin/tjbench
29 changes: 29 additions & 0 deletions quay.io/biocontainers/bioconductor-piuma/container.yaml
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url: https://biocontainers.pro/tools/bioconductor-piuma
maintainer: '@vsoch'
description: singularity registry hpc automated addition for bioconductor-piuma
latest:
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docker: quay.io/biocontainers/bioconductor-piuma
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tomlq: /usr/local/bin/tomlq
xq: /usr/local/bin/xq
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jq: /usr/local/bin/jq
onig-config: /usr/local/bin/onig-config
pandoc: /usr/local/bin/pandoc
hb-info: /usr/local/bin/hb-info
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register-python-argcomplete: /usr/local/bin/register-python-argcomplete
tjbench: /usr/local/bin/tjbench
25 changes: 25 additions & 0 deletions quay.io/biocontainers/bioconductor-rblast/container.yaml
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url: https://biocontainers.pro/tools/bioconductor-rblast
maintainer: '@vsoch'
description: singularity registry hpc automated addition for bioconductor-rblast
latest:
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register-python-argcomplete: /usr/local/bin/register-python-argcomplete
tjbench: /usr/local/bin/tjbench
29 changes: 29 additions & 0 deletions quay.io/biocontainers/bioconductor-scdotplot/container.yaml
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url: https://biocontainers.pro/tools/bioconductor-scdotplot
maintainer: '@vsoch'
description: singularity registry hpc automated addition for bioconductor-scdotplot
latest:
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tags:
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python3.13: /usr/local/bin/python3.13
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installBiocDataPackage.sh: /usr/local/bin/installBiocDataPackage.sh
tomlq: /usr/local/bin/tomlq
xq: /usr/local/bin/xq
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jq: /usr/local/bin/jq
onig-config: /usr/local/bin/onig-config
pandoc: /usr/local/bin/pandoc
hb-info: /usr/local/bin/hb-info
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python-argcomplete-check-easy-install-script: /usr/local/bin/python-argcomplete-check-easy-install-script
register-python-argcomplete: /usr/local/bin/register-python-argcomplete
tjbench: /usr/local/bin/tjbench
27 changes: 27 additions & 0 deletions quay.io/biocontainers/bioconductor-spillr/container.yaml
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url: https://biocontainers.pro/tools/bioconductor-spillr
maintainer: '@vsoch'
description: singularity registry hpc automated addition for bioconductor-spillr
latest:
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tags:
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docker: quay.io/biocontainers/bioconductor-spillr
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python3.13: /usr/local/bin/python3.13
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installBiocDataPackage.sh: /usr/local/bin/installBiocDataPackage.sh
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jq: /usr/local/bin/jq
onig-config: /usr/local/bin/onig-config
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register-python-argcomplete: /usr/local/bin/register-python-argcomplete
tjbench: /usr/local/bin/tjbench
26 changes: 26 additions & 0 deletions quay.io/biocontainers/bioconductor-stabmap/container.yaml
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url: https://biocontainers.pro/tools/bioconductor-stabmap
maintainer: '@vsoch'
description: singularity registry hpc automated addition for bioconductor-stabmap
latest:
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docker: quay.io/biocontainers/bioconductor-stabmap
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python3.13: /usr/local/bin/python3.13
python3.13-config: /usr/local/bin/python3.13-config
glpsol: /usr/local/bin/glpsol
installBiocDataPackage.sh: /usr/local/bin/installBiocDataPackage.sh
tomlq: /usr/local/bin/tomlq
xq: /usr/local/bin/xq
yq: /usr/local/bin/yq
jq: /usr/local/bin/jq
onig-config: /usr/local/bin/onig-config
hb-info: /usr/local/bin/hb-info
activate-global-python-argcomplete: /usr/local/bin/activate-global-python-argcomplete
python-argcomplete-check-easy-install-script: /usr/local/bin/python-argcomplete-check-easy-install-script
register-python-argcomplete: /usr/local/bin/register-python-argcomplete
tjbench: /usr/local/bin/tjbench
25 changes: 25 additions & 0 deletions quay.io/biocontainers/bioconductor-tidycoverage/container.yaml
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url: https://biocontainers.pro/tools/bioconductor-tidycoverage
maintainer: '@vsoch'
description: singularity registry hpc automated addition for bioconductor-tidycoverage
latest:
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docker: quay.io/biocontainers/bioconductor-tidycoverage
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jq: /usr/local/bin/jq
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python-argcomplete-check-easy-install-script: /usr/local/bin/python-argcomplete-check-easy-install-script
register-python-argcomplete: /usr/local/bin/register-python-argcomplete
tjbench: /usr/local/bin/tjbench
29 changes: 29 additions & 0 deletions quay.io/biocontainers/bioconductor-tidyomics/container.yaml
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url: https://biocontainers.pro/tools/bioconductor-tidyomics
maintainer: '@vsoch'
description: singularity registry hpc automated addition for bioconductor-tidyomics
latest:
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docker: quay.io/biocontainers/bioconductor-tidyomics
aliases:
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idle3.13: /usr/local/bin/idle3.13
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python3.13-config: /usr/local/bin/python3.13-config
glpsol: /usr/local/bin/glpsol
installBiocDataPackage.sh: /usr/local/bin/installBiocDataPackage.sh
tomlq: /usr/local/bin/tomlq
xq: /usr/local/bin/xq
yq: /usr/local/bin/yq
jq: /usr/local/bin/jq
onig-config: /usr/local/bin/onig-config
pandoc: /usr/local/bin/pandoc
hb-info: /usr/local/bin/hb-info
activate-global-python-argcomplete: /usr/local/bin/activate-global-python-argcomplete
python-argcomplete-check-easy-install-script: /usr/local/bin/python-argcomplete-check-easy-install-script
register-python-argcomplete: /usr/local/bin/register-python-argcomplete
tjbench: /usr/local/bin/tjbench
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url: https://biocontainers.pro/tools/bioconductor-tidyspatialexperiment
maintainer: '@vsoch'
description: singularity registry hpc automated addition for bioconductor-tidyspatialexperiment
latest:
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docker: quay.io/biocontainers/bioconductor-tidyspatialexperiment
aliases:
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x265: /usr/local/bin/x265
rav1e: /usr/local/bin/rav1e
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dav1d: /usr/local/bin/dav1d
aomdec: /usr/local/bin/aomdec
aomenc: /usr/local/bin/aomenc
pandoc-lua: /usr/local/bin/pandoc-lua
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pandoc-server: /usr/local/bin/pandoc-server
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pydoc3.13: /usr/local/bin/pydoc3.13
python3.13: /usr/local/bin/python3.13
python3.13-config: /usr/local/bin/python3.13-config
x86_64-conda-linux-gnu-pkg-config: /usr/local/bin/x86_64-conda-linux-gnu-pkg-config
Magick++-config: /usr/local/bin/Magick++-config
MagickCore-config: /usr/local/bin/MagickCore-config
MagickWand-config: /usr/local/bin/MagickWand-config
animate: /usr/local/bin/animate
composite: /usr/local/bin/composite
conjure: /usr/local/bin/conjure
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27 changes: 27 additions & 0 deletions quay.io/biocontainers/bioconductor-treeclimbr/container.yaml
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url: https://biocontainers.pro/tools/bioconductor-treeclimbr
maintainer: '@vsoch'
description: singularity registry hpc automated addition for bioconductor-treeclimbr
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docker: quay.io/biocontainers/bioconductor-treeclimbr
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glpsol: /usr/local/bin/glpsol
installBiocDataPackage.sh: /usr/local/bin/installBiocDataPackage.sh
tomlq: /usr/local/bin/tomlq
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jq: /usr/local/bin/jq
onig-config: /usr/local/bin/onig-config
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tjbench: /usr/local/bin/tjbench
35 changes: 35 additions & 0 deletions quay.io/biocontainers/bioconductor-visiumio/container.yaml
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url: https://biocontainers.pro/tools/bioconductor-visiumio
maintainer: '@vsoch'
description: singularity registry hpc automated addition for bioconductor-visiumio
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docker: quay.io/biocontainers/bioconductor-visiumio
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Magick++-config: /usr/local/bin/Magick++-config
MagickCore-config: /usr/local/bin/MagickCore-config
MagickWand-config: /usr/local/bin/MagickWand-config
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magick: /usr/local/bin/magick
magick-script: /usr/local/bin/magick-script
mogrify: /usr/local/bin/mogrify
montage: /usr/local/bin/montage
55 changes: 55 additions & 0 deletions quay.io/biocontainers/excludonfinder/container.yaml
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url: https://biocontainers.pro/tools/excludonfinder
maintainer: '@vsoch'
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bwa-mem2.avx512bw: /usr/local/bin/bwa-mem2.avx512bw
bwa-mem2.sse41: /usr/local/bin/bwa-mem2.sse41
bwa-mem2.sse42: /usr/local/bin/bwa-mem2.sse42
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featureCounts: /usr/local/bin/featureCounts
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genRandomReads: /usr/local/bin/genRandomReads
propmapped: /usr/local/bin/propmapped
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sublong: /usr/local/bin/sublong
subread-align: /usr/local/bin/subread-align
subread-buildindex: /usr/local/bin/subread-buildindex
subread-fullscan: /usr/local/bin/subread-fullscan
x86_64-conda-linux-gnu.cfg: /usr/local/bin/x86_64-conda-linux-gnu.cfg
annot-tsv: /usr/local/bin/annot-tsv
idle3.13: /usr/local/bin/idle3.13
pydoc3.13: /usr/local/bin/pydoc3.13
python3.13: /usr/local/bin/python3.13
python3.13-config: /usr/local/bin/python3.13-config
parsort: /usr/local/bin/parsort
env_parallel: /usr/local/bin/env_parallel
env_parallel.ash: /usr/local/bin/env_parallel.ash
env_parallel.bash: /usr/local/bin/env_parallel.bash
env_parallel.csh: /usr/local/bin/env_parallel.csh
env_parallel.dash: /usr/local/bin/env_parallel.dash
env_parallel.fish: /usr/local/bin/env_parallel.fish
env_parallel.ksh: /usr/local/bin/env_parallel.ksh
env_parallel.mksh: /usr/local/bin/env_parallel.mksh
env_parallel.pdksh: /usr/local/bin/env_parallel.pdksh
env_parallel.sh: /usr/local/bin/env_parallel.sh
env_parallel.tcsh: /usr/local/bin/env_parallel.tcsh
env_parallel.zsh: /usr/local/bin/env_parallel.zsh
niceload: /usr/local/bin/niceload
parcat: /usr/local/bin/parcat
parset: /usr/local/bin/parset
sem: /usr/local/bin/sem
sql: /usr/local/bin/sql
parallel: /usr/local/bin/parallel
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