[bot] update/containers-2024-02-08

quay.io/biocontainers/bed2gff/container.yaml

@@ -0,0 +1,10 @@
+url: https://biocontainers.pro/tools/bed2gff
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for bed2gff
+latest:
+  0.1.3--h4ac6f70_0: sha256:caa3ee07079f92a022b6f59b75854c9fe40a1ef10b254e49425778290b8a68ac
+tags:
+  0.1.3--h4ac6f70_0: sha256:caa3ee07079f92a022b6f59b75854c9fe40a1ef10b254e49425778290b8a68ac
+docker: quay.io/biocontainers/bed2gff
+aliases:
+  bed2gff: /usr/local/bin/bed2gff

quay.io/biocontainers/hmftools-bam-tools/container.yaml

@@ -0,0 +1,34 @@
+url: https://biocontainers.pro/tools/hmftools-bam-tools
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for hmftools-bam-tools
+latest:
+  1.2--hdfd78af_0: sha256:67db5eb1951e9600321855476c0d3d60b4c6db1f7929b722068dec63657e0c76
+tags:
+  1.2--hdfd78af_0: sha256:67db5eb1951e9600321855476c0d3d60b4c6db1f7929b722068dec63657e0c76
+docker: quay.io/biocontainers/hmftools-bam-tools
+aliases:
+  jwebserver: /usr/local/bin/jwebserver
+  bamtools: /usr/local/bin/bamtools
+  pcre2posix_test: /usr/local/bin/pcre2posix_test
+  jpackage: /usr/local/bin/jpackage
+  cups-config: /usr/local/bin/cups-config
+  ippeveprinter: /usr/local/bin/ippeveprinter
+  ipptool: /usr/local/bin/ipptool
+  hb-info: /usr/local/bin/hb-info
+  tjbench: /usr/local/bin/tjbench
+  jfr: /usr/local/bin/jfr
+  jdeprscan: /usr/local/bin/jdeprscan
+  jhsdb: /usr/local/bin/jhsdb
+  jimage: /usr/local/bin/jimage
+  jlink: /usr/local/bin/jlink
+  jmod: /usr/local/bin/jmod
+  jshell: /usr/local/bin/jshell
+  aserver: /usr/local/bin/aserver
+  jdeps: /usr/local/bin/jdeps
+  jar: /usr/local/bin/jar
+  jarsigner: /usr/local/bin/jarsigner
+  java: /usr/local/bin/java
+  javac: /usr/local/bin/javac
+  javadoc: /usr/local/bin/javadoc
+  javap: /usr/local/bin/javap
+  jcmd: /usr/local/bin/jcmd

quay.io/biocontainers/hmftools-virus-interpreter/container.yaml

@@ -0,0 +1,35 @@
+url: https://biocontainers.pro/tools/hmftools-virus-interpreter
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for hmftools-virus-interpreter
+latest:
+  1.3--hdfd78af_0: sha256:4afd72551649e8cfb6c7e5eedc22c54b9fba5c2bc1cf816417b644810ceed4bc
+tags:
+  1.3--hdfd78af_0: sha256:4afd72551649e8cfb6c7e5eedc22c54b9fba5c2bc1cf816417b644810ceed4bc
+docker: quay.io/biocontainers/hmftools-virus-interpreter
+aliases:
+  virusinterpreter: /usr/local/bin/virusinterpreter
+  jwebserver: /usr/local/bin/jwebserver
+  pcre2posix_test: /usr/local/bin/pcre2posix_test
+  jpackage: /usr/local/bin/jpackage
+  cups-config: /usr/local/bin/cups-config
+  ippeveprinter: /usr/local/bin/ippeveprinter
+  ipptool: /usr/local/bin/ipptool
+  hb-info: /usr/local/bin/hb-info
+  tjbench: /usr/local/bin/tjbench
+  jfr: /usr/local/bin/jfr
+  jdeprscan: /usr/local/bin/jdeprscan
+  jhsdb: /usr/local/bin/jhsdb
+  jimage: /usr/local/bin/jimage
+  jlink: /usr/local/bin/jlink
+  jmod: /usr/local/bin/jmod
+  jshell: /usr/local/bin/jshell
+  aserver: /usr/local/bin/aserver
+  jdeps: /usr/local/bin/jdeps
+  jar: /usr/local/bin/jar
+  jarsigner: /usr/local/bin/jarsigner
+  java: /usr/local/bin/java
+  javac: /usr/local/bin/javac
+  javadoc: /usr/local/bin/javadoc
+  javap: /usr/local/bin/javap
+  jcmd: /usr/local/bin/jcmd
+  jconsole: /usr/local/bin/jconsole

quay.io/biocontainers/monopogen/container.yaml

@@ -0,0 +1,36 @@
+url: https://biocontainers.pro/tools/monopogen
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for monopogen
+latest:
+  1.1.0--pyhdfd78af_0: sha256:582f1bed3cc9c5e7253e7d191a4478a1d3812949fdfaa28ea53a6407dff24b0d
+tags:
+  1.1.0--pyhdfd78af_0: sha256:582f1bed3cc9c5e7253e7d191a4478a1d3812949fdfaa28ea53a6407dff24b0d
+docker: quay.io/biocontainers/monopogen
+aliases:
+  annot-tsv: /usr/local/bin/annot-tsv
+  beagle: /usr/local/bin/beagle
+  jwebserver: /usr/local/bin/jwebserver
+  gff2gff.py: /usr/local/bin/gff2gff.py
+  jpackage: /usr/local/bin/jpackage
+  guess-ploidy.py: /usr/local/bin/guess-ploidy.py
+  plot-roh.py: /usr/local/bin/plot-roh.py
+  run-roh.pl: /usr/local/bin/run-roh.pl
+  color-chrs.pl: /usr/local/bin/color-chrs.pl
+  plot-vcfstats: /usr/local/bin/plot-vcfstats
+  cups-config: /usr/local/bin/cups-config
+  ippeveprinter: /usr/local/bin/ippeveprinter
+  ipptool: /usr/local/bin/ipptool
+  bcftools: /usr/local/bin/bcftools
+  vcfutils.pl: /usr/local/bin/vcfutils.pl
+  hb-info: /usr/local/bin/hb-info
+  fasta-sanitize.pl: /usr/local/bin/fasta-sanitize.pl
+  plot-ampliconstats: /usr/local/bin/plot-ampliconstats
+  tjbench: /usr/local/bin/tjbench
+  jfr: /usr/local/bin/jfr
+  jdeprscan: /usr/local/bin/jdeprscan
+  jhsdb: /usr/local/bin/jhsdb
+  jimage: /usr/local/bin/jimage
+  jlink: /usr/local/bin/jlink
+  jmod: /usr/local/bin/jmod
+  jshell: /usr/local/bin/jshell
+  aserver: /usr/local/bin/aserver

quay.io/biocontainers/r-chord/container.yaml

@@ -0,0 +1,26 @@
+url: https://biocontainers.pro/tools/r-chord
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for r-chord
+latest:
+  2.03--r43hdfd78af_0: sha256:0047ba6cd5e785b9fc138de34c6ccc97d476c526d964385f1643ef5b5cbff104
+tags:
+  2.03--r43hdfd78af_0: sha256:0047ba6cd5e785b9fc138de34c6ccc97d476c526d964385f1643ef5b5cbff104
+docker: quay.io/biocontainers/r-chord
+aliases:
+  pcre2posix_test: /usr/local/bin/pcre2posix_test
+  2to3-3.12: /usr/local/bin/2to3-3.12
+  idle3.12: /usr/local/bin/idle3.12
+  pydoc3.12: /usr/local/bin/pydoc3.12
+  python3.12: /usr/local/bin/python3.12
+  python3.12-config: /usr/local/bin/python3.12-config
+  hb-info: /usr/local/bin/hb-info
+  installBiocDataPackage.sh: /usr/local/bin/installBiocDataPackage.sh
+  tomlq: /usr/local/bin/tomlq
+  xq: /usr/local/bin/xq
+  yq: /usr/local/bin/yq
+  jq: /usr/local/bin/jq
+  onig-config: /usr/local/bin/onig-config
+  tjbench: /usr/local/bin/tjbench
+  activate-global-python-argcomplete: /usr/local/bin/activate-global-python-argcomplete
+  python-argcomplete-check-easy-install-script: /usr/local/bin/python-argcomplete-check-easy-install-script
+  register-python-argcomplete: /usr/local/bin/register-python-argcomplete

quay.io/biocontainers/r-mutsigextractor/container.yaml

@@ -0,0 +1,26 @@
+url: https://biocontainers.pro/tools/r-mutsigextractor
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for r-mutsigextractor
+latest:
+  1.28--r43hdfd78af_0: sha256:e88364812ad15f127b19c0d84cf969c51686e8e8af0fbf25ce8d298e06f64319
+tags:
+  1.28--r43hdfd78af_0: sha256:e88364812ad15f127b19c0d84cf969c51686e8e8af0fbf25ce8d298e06f64319
+docker: quay.io/biocontainers/r-mutsigextractor
+aliases:
+  pcre2posix_test: /usr/local/bin/pcre2posix_test
+  2to3-3.12: /usr/local/bin/2to3-3.12
+  idle3.12: /usr/local/bin/idle3.12
+  pydoc3.12: /usr/local/bin/pydoc3.12
+  python3.12: /usr/local/bin/python3.12
+  python3.12-config: /usr/local/bin/python3.12-config
+  hb-info: /usr/local/bin/hb-info
+  installBiocDataPackage.sh: /usr/local/bin/installBiocDataPackage.sh
+  tomlq: /usr/local/bin/tomlq
+  xq: /usr/local/bin/xq
+  yq: /usr/local/bin/yq
+  jq: /usr/local/bin/jq
+  onig-config: /usr/local/bin/onig-config
+  tjbench: /usr/local/bin/tjbench
+  activate-global-python-argcomplete: /usr/local/bin/activate-global-python-argcomplete
+  python-argcomplete-check-easy-install-script: /usr/local/bin/python-argcomplete-check-easy-install-script
+  register-python-argcomplete: /usr/local/bin/register-python-argcomplete

quay.io/biocontainers/vcfsim/container.yaml

@@ -0,0 +1,23 @@
+url: https://biocontainers.pro/tools/vcfsim
+maintainer: '@vsoch'
+description: singularity registry hpc automated addition for vcfsim
+latest:
+  1.0.8.alpha--pyhca03a8a_0: sha256:4d690c5dd2fc88c5ce2a5279e6a431e0dd66be96a0fb12f20a0a310c7c79ea1e
+tags:
+  1.0.8.alpha--pyhca03a8a_0: sha256:4d690c5dd2fc88c5ce2a5279e6a431e0dd66be96a0fb12f20a0a310c7c79ea1e
+docker: quay.io/biocontainers/vcfsim
+aliases:
+  demes: /usr/local/bin/demes
+  msp: /usr/local/bin/msp
+  mspms: /usr/local/bin/mspms
+  tskit: /usr/local/bin/tskit
+  vcfsim: /usr/local/bin/vcfsim
+  ipython3: /usr/local/bin/ipython3
+  ipython: /usr/local/bin/ipython
+  2to3-3.12: /usr/local/bin/2to3-3.12
+  idle3.12: /usr/local/bin/idle3.12
+  pydoc3.12: /usr/local/bin/pydoc3.12
+  python3.12: /usr/local/bin/python3.12
+  python3.12-config: /usr/local/bin/python3.12-config
+  jsonschema: /usr/local/bin/jsonschema
+  pygmentize: /usr/local/bin/pygmentize