serotyping

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SISTR (Salmonella In Silico Typing Resource) command-line tool

bioinformatics serotyping salmonella cgmlst sistr

UPHL's Reference Free Pipeline

docker bioinformatics genomics nextflow ngs singularity illumina serotyping prokaryotes

In silico serotype prediction for Listeria monocytogenes

Pathogen whole genome sequence (WGS) data analysis pipeline

nanopore pathogen taxonomy assembly ngs amr mlst illumina plasmid serotyping virulome emm-typing capsular-typing

IRIDA plugin for ECTyper (E.coli in silico typing tool)

escherichia-coli serotyping

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