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Add type to DataPoint metadata #362

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@alekszievr alekszievr commented Dec 12, 2024

Summary by CodeRabbit

  • New Features

    • Added _metadata dictionary to various classes, enhancing metadata with type information.
    • Introduced new classes Car and Person with their own metadata.
    • Added batch_search method to WeaviateAdapter for executing multiple searches.
  • Bug Fixes

    • Improved error handling in several adapter methods to ensure proper validation of inputs.
  • Documentation

    • Updated metadata descriptions across multiple classes to clarify their roles.
  • Chores

    • Reorganized import statements for better clarity and consistency across files.

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📥 Commits

Reviewing files that changed from the base of the PR and between 076b3bf and 47f5da4.

📒 Files selected for processing (19)
  • cognee/infrastructure/databases/hybrid/falkordb/FalkorDBAdapter.py (1 hunks)
  • cognee/infrastructure/databases/vector/lancedb/LanceDBAdapter.py (1 hunks)
  • cognee/infrastructure/databases/vector/milvus/MilvusAdapter.py (2 hunks)
  • cognee/infrastructure/databases/vector/pgvector/PGVectorAdapter.py (1 hunks)
  • cognee/infrastructure/databases/vector/qdrant/QDrantAdapter.py (1 hunks)
  • cognee/infrastructure/databases/vector/weaviate_db/WeaviateAdapter.py (1 hunks)
  • cognee/infrastructure/engine/models/DataPoint.py (3 hunks)
  • cognee/modules/chunking/models/DocumentChunk.py (2 hunks)
  • cognee/modules/data/processing/document_types/Document.py (1 hunks)
  • cognee/modules/engine/models/Entity.py (1 hunks)
  • cognee/modules/engine/models/EntityType.py (1 hunks)
  • cognee/modules/graph/models/EdgeType.py (1 hunks)
  • cognee/modules/graph/utils/convert_node_to_data_point.py (1 hunks)
  • cognee/shared/CodeGraphEntities.py (1 hunks)
  • cognee/shared/SourceCodeGraph.py (2 hunks)
  • cognee/tasks/storage/index_data_points.py (2 hunks)
  • cognee/tasks/summarization/models.py (2 hunks)
  • cognee/tests/unit/interfaces/graph/get_graph_from_huge_model_test.py (2 hunks)
  • cognee/tests/unit/interfaces/graph/get_graph_from_model_test.py (1 hunks)

Walkthrough

The pull request introduces modifications across multiple database adapter classes, primarily focusing on the addition of a _metadata dictionary to various classes, enhancing their type definitions. New asynchronous methods, such as prune, are added to facilitate graph deletion. Import statements are reorganized for clarity, and several method signatures are updated to enhance type safety. Error handling is refined in various methods, and redundant or duplicate method definitions are noted. Overall, these changes aim to improve code structure and maintainability without altering core functionalities.

Changes

File Path Change Summary
cognee/infrastructure/databases/hybrid/falkordb/FalkorDBAdapter.py Added async def prune(self), updated _metadata in IndexSchema to include "type": "IndexSchema", reorganized imports.
cognee/infrastructure/databases/vector/lancedb/LanceDBAdapter.py Added async def prune(self), updated _metadata in IndexSchema, refined create_collection and create_data_points methods.
cognee/infrastructure/databases/vector/milvus/MilvusAdapter.py Updated _metadata in IndexSchema, reorganized imports, modified prune method to drop collection after closing connection.
cognee/infrastructure/databases/vector/pgvector/PGVectorAdapter.py Added nested PGVectorDataPoint class in create_collection and create_data_points, updated _metadata in IndexSchema.
cognee/infrastructure/databases/vector/qdrant/QDrantAdapter.py Updated _metadata in IndexSchema, refined method signatures for type hints, modified prune method for resource management.
cognee/infrastructure/databases/vector/weaviate_db/WeaviateAdapter.py Added async def batch_search(self), updated _metadata in IndexSchema, enhanced error handling in create_data_points.
cognee/infrastructure/engine/models/DataPoint.py Updated _metadata in DataPoint, added duplicate method get_embeddable_property_names.
cognee/modules/chunking/models/DocumentChunk.py Updated _metadata to include "type": "DocumentChunk".
cognee/modules/data/processing/document_types/Document.py Added _metadata with "type": "Document", removed type attribute.
cognee/modules/engine/models/Entity.py Updated _metadata to include "type": "Entity".
cognee/modules/graph/models/EdgeType.py Updated _metadata to include "type": "EdgeType".
cognee/modules/graph/utils/convert_node_to_data_point.py Modified convert_node_to_data_point to access type via _metadata.
cognee/shared/CodeGraphEntities.py Removed type attributes, added _metadata dictionaries with corresponding types for classes.
cognee/shared/SourceCodeGraph.py Removed Literal type annotations, added _metadata dictionaries for various classes.
cognee/tasks/storage/index_data_points.py Modified index_data_points and get_data_points_from_model, added Car and Person classes with _metadata.
cognee/tasks/summarization/models.py Updated _metadata in TextSummary and CodeSummary classes to include respective types.
cognee/tests/unit/interfaces/graph/get_graph_from_huge_model_test.py Added _metadata to Repository, CodeFile, and CodePart classes.
cognee/tests/unit/interfaces/graph/get_graph_from_model_test.py Added _metadata to Document, DocumentChunk, EntityType, and Entity classes.

Possibly related PRs

Suggested reviewers

  • hajdul88
  • borisarzentar

Poem

🐰 In the code where bunnies play,
New types and methods come to stay.
With metadata shining bright,
Our classes now feel just right!
Prune the graphs, let data flow,
In this code, our magic grows! 🌟


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Actionable comments posted: 10

🧹 Outside diff range and nitpick comments (5)
cognee/tasks/storage/index_data_points.py (3)

Line range hint 34-82: Add type hints for default parameters

Consider adding type hints for added_data_points and visited_properties to improve code clarity:

-async def get_data_points_from_model(data_point: DataPoint, added_data_points = None, visited_properties = None) -> list[DataPoint]:
+async def get_data_points_from_model(
+    data_point: DataPoint,
+    added_data_points: dict[str, bool] | None = None,
+    visited_properties: dict[str, bool] | None = None
+) -> list[DataPoint]:

84-86: Consider using a base type definition

The type metadata addition is good, but consider defining a base type structure to ensure consistency across all DataPoint classes.

# In the DataPoint base class:
class DataPoint:
    _metadata: ClassVar[dict] = {
        "type": "DataPoint",
        "index_fields": []
    }

# In derived classes:
class Car(DataPoint):
    _metadata = {
        "type": "Car",
        "index_fields": []  # Preserve existing metadata
    }

Also applies to: 93-95


83-95: Add docstrings to test classes

Consider adding docstrings to the test classes to document their purpose and metadata structure.

 class Car(DataPoint):
+    """Test class representing a car with type metadata.
+    
+    Attributes:
+        model (str): The car model
+        color (str): The car color
+    """
     model: str
     color: str
     _metadata = {
         "type": "Car"
     }

 class Person(DataPoint):
+    """Test class representing a person with type metadata and car ownership.
+    
+    Attributes:
+        name (str): Person's name
+        age (int): Person's age
+        owns_car (list[Car]): List of cars owned by the person
+    """
     name: str
     age: int
     owns_car: list[Car]
cognee/shared/CodeGraphEntities.py (1)

42-44: Consider adding index_fields to CodeRelationship metadata for consistency.

While other classes include both "type" and "index_fields" in their metadata, CodeRelationship only includes "type". Consider adding the index_fields entry for consistency, even if empty.

 _metadata: dict = {
+    "index_fields": [],
     "type": "CodeRelationship"
 }
cognee/infrastructure/databases/vector/lancedb/LanceDBAdapter.py (1)

Line range hint 91-106: Consider extracting LanceDataPoint to module level

The LanceDataPoint class is defined twice in the file (in both create_collection and create_data_points methods). Consider extracting it to module level to avoid duplication and improve maintainability.

+IdType = TypeVar("IdType")
+PayloadSchema = TypeVar("PayloadSchema")
+
+class LanceDataPoint(LanceModel, Generic[IdType, PayloadSchema]):
+    id: IdType
+    vector: Vector
+    payload: PayloadSchema
+
+    def __init__(self, vector_size: int, *args, **kwargs):
+        super().__init__(*args, **kwargs)
+        self.__annotations__["vector"] = Vector(vector_size)

 class LanceDBAdapter(VectorDBInterface):
     # ... existing code ...

     async def create_collection(self, collection_name: str, payload_schema: BaseModel):
         vector_size = self.embedding_engine.get_vector_size()
         payload_schema = self.get_data_point_schema(payload_schema)
-        data_point_types = get_type_hints(payload_schema)
-
-        class LanceDataPoint(LanceModel):
-            id: data_point_types["id"]
-            vector: Vector(vector_size)
-            payload: payload_schema
+        DataPointType = LanceDataPoint[str, payload_schema]

     async def create_data_points(self, collection_name: str, data_points: list[DataPoint]):
         # ... existing code ...
-        IdType = TypeVar("IdType")
-        PayloadSchema = TypeVar("PayloadSchema")
-        vector_size = self.embedding_engine.get_vector_size()
-
-        class LanceDataPoint(LanceModel, Generic[IdType, PayloadSchema]):
-            id: IdType
-            vector: Vector(vector_size)
-            payload: PayloadSchema
📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL
Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between 3935660 and 02f1de7.

📒 Files selected for processing (18)
  • cognee/infrastructure/databases/hybrid/falkordb/FalkorDBAdapter.py (2 hunks)
  • cognee/infrastructure/databases/vector/lancedb/LanceDBAdapter.py (1 hunks)
  • cognee/infrastructure/databases/vector/milvus/MilvusAdapter.py (3 hunks)
  • cognee/infrastructure/databases/vector/pgvector/PGVectorAdapter.py (2 hunks)
  • cognee/infrastructure/databases/vector/qdrant/QDrantAdapter.py (2 hunks)
  • cognee/infrastructure/databases/vector/weaviate_db/WeaviateAdapter.py (2 hunks)
  • cognee/infrastructure/engine/models/DataPoint.py (3 hunks)
  • cognee/modules/chunking/models/DocumentChunk.py (2 hunks)
  • cognee/modules/data/processing/document_types/Document.py (1 hunks)
  • cognee/modules/engine/models/Entity.py (1 hunks)
  • cognee/modules/graph/models/EdgeType.py (1 hunks)
  • cognee/modules/graph/utils/convert_node_to_data_point.py (1 hunks)
  • cognee/shared/CodeGraphEntities.py (1 hunks)
  • cognee/shared/SourceCodeGraph.py (2 hunks)
  • cognee/tasks/storage/index_data_points.py (3 hunks)
  • cognee/tasks/summarization/models.py (2 hunks)
  • cognee/tests/unit/interfaces/graph/get_graph_from_huge_model_test.py (2 hunks)
  • cognee/tests/unit/interfaces/graph/get_graph_from_model_test.py (2 hunks)
✅ Files skipped from review due to trivial changes (3)
  • cognee/modules/engine/models/Entity.py
  • cognee/modules/graph/models/EdgeType.py
  • cognee/modules/chunking/models/DocumentChunk.py
🧰 Additional context used
🪛 Ruff (0.8.2)
cognee/modules/data/processing/document_types/Document.py

17-17: Redefinition of unused read from line 15

(F811)

cognee/infrastructure/databases/vector/milvus/MilvusAdapter.py

256-256: SyntaxError: Unexpected indentation

cognee/infrastructure/engine/models/DataPoint.py

46-46: Redefinition of unused get_embeddable_property_names from line 44

(F811)

cognee/infrastructure/databases/hybrid/falkordb/FalkorDBAdapter.py

343-343: SyntaxError: Unexpected indentation

cognee/infrastructure/databases/vector/qdrant/QDrantAdapter.py

278-278: SyntaxError: Unexpected indentation

🔇 Additional comments (20)
cognee/infrastructure/databases/vector/milvus/MilvusAdapter.py (2)

7-12: LGTM! Import organization improves readability

The reorganization of imports follows good practices by:

  • Separating standard library imports from project imports
  • Grouping related imports together

21-22: LGTM! Type metadata addition aligns with PR objective

The addition of "type": "IndexSchema" to metadata:

  • Enhances type safety and identification
  • Maintains consistency with other adapter implementations
cognee/tasks/storage/index_data_points.py (1)

Line range hint 4-32: Verify index_fields metadata existence

The function assumes _metadata["index_fields"] exists but with the addition of type metadata, we should ensure this doesn't break existing functionality.

cognee/infrastructure/databases/vector/weaviate_db/WeaviateAdapter.py (3)

8-8: Correctly added import for EmbeddingEngine

The import statement for EmbeddingEngine is necessary for the use of the embedding functionality within the WeaviateAdapter class.


10-10: Correctly added import for ScoredResult

The import of ScoredResult enables the adapter to return search results with scores, which is appropriate.


19-20: Updated _metadata with "type": "IndexSchema"

Adding the "type" key to the _metadata dictionary in IndexSchema enhances type identification and consistency across the codebase.

cognee/modules/data/processing/document_types/Document.py (2)

3-3: Imported DataPoint successfully

The import statement brings in DataPoint for inheritance, which is correct.


11-13: Added _metadata to Document class

Including the _metadata dictionary with "type": "Document" improves metadata consistency and aids in type identification.

cognee/tasks/summarization/models.py (2)

13-13: Added "type": "TextSummary" to _metadata

Updating the _metadata dictionary in TextSummary with "type": "TextSummary" enhances type identification and aligns with the metadata structure used elsewhere.


24-24: Added "type": "CodeSummary" to _metadata

Including the "type": "CodeSummary" key in the _metadata dictionary of CodeSummary improves consistency and aids in distinguishing data point types.

cognee/shared/CodeGraphEntities.py (1)

9-12: LGTM! Consistent metadata implementation across classes.

The addition of type information in _metadata is well-structured and consistent across Repository, CodeFile, and CodePart classes.

Also applies to: 23-26, 33-36

cognee/infrastructure/engine/models/DataPoint.py (1)

18-19: LGTM! Base class metadata properly defined.

The addition of type information to the base DataPoint class is well-implemented while preserving the existing index_fields structure.

cognee/tests/unit/interfaces/graph/get_graph_from_model_test.py (1)

12-14: LGTM! Consistent type metadata in test classes.

The addition of type information in test classes follows the same pattern as the main implementation classes.

Also applies to: 20-22, 26-28, 33-35

cognee/shared/SourceCodeGraph.py (1)

14-15: Verify the impact of replacing Literal types with metadata

The change from Literal type hints to metadata-based type information is a significant architectural change. While this provides runtime type information, it removes compile-time type checking benefits.

Also applies to: 23-24, 35-36, 47-48, 59-60, 68-69, 78-79, 96-97

cognee/tests/unit/interfaces/graph/get_graph_from_huge_model_test.py (1)

14-16: LGTM! Consistent metadata implementation

The addition of type metadata to Repository, CodeFile, and CodePart classes is consistent with the PR objective and maintains test functionality.

Also applies to: 23-25, 30-32

cognee/infrastructure/databases/vector/lancedb/LanceDBAdapter.py (1)

24-27: LGTM! Consistent metadata implementation

The addition of type metadata to IndexSchema is consistent with the PR objective.

cognee/infrastructure/databases/vector/qdrant/QDrantAdapter.py (1)

21-22: LGTM: Metadata type addition is consistent

The addition of "type": "IndexSchema" to _metadata aligns with the PR objective.

cognee/infrastructure/databases/vector/pgvector/PGVectorAdapter.py (2)

26-27: LGTM: Metadata type addition is consistent

The addition of "type": "IndexSchema" to _metadata aligns with the PR objective.


314-315: ⚠️ Potential issue

Remove redundant delete_database call

The delete_database() method is called twice unnecessarily.

Apply this diff to fix the issue:

    async def prune(self):
        # Clean up the database if it was set up as temporary
        await self.delete_database()
-        # Clean up the database if it was set up as temporary
-        await self.delete_database()

Likely invalid or redundant comment.

cognee/infrastructure/databases/hybrid/falkordb/FalkorDBAdapter.py (1)

22-23: LGTM: Metadata type addition is consistent

The addition of "type": "IndexSchema" to _metadata aligns with the PR objective.

Comment on lines 256 to 257
client.drop_collection(collection_name=collection_name)
client.close()
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⚠️ Potential issue

Remove duplicate code in prune method

These lines appear to be accidentally duplicated from the code above. They perform the same collection drop operation unnecessarily and have incorrect indentation.

Apply this diff to fix the issue:

    async def prune(self):
        client = self.get_milvus_client()
        if client:
            collections = client.list_collections()
            for collection_name in collections:
                client.drop_collection(collection_name=collection_name)
            client.close()
-                client.drop_collection(collection_name=collection_name)
-            client.close()
📝 Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.

Suggested change
client.drop_collection(collection_name=collection_name)
client.close()
client.drop_collection(collection_name=collection_name)
client.close()
🧰 Tools
🪛 Ruff (0.8.2)

256-256: SyntaxError: Unexpected indentation

@@ -93,3 +101,4 @@ class Person(DataPoint):
data_points = get_data_points_from_model(person)

print(data_points)
print(data_points)
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⚠️ Potential issue

Remove duplicate print statement

The data_points are printed twice. Remove the duplicate print statement.

-    print(data_points)

@@ -243,3 +245,4 @@ async def delete_data_points(self, collection_name: str, data_point_ids: list[st

async def prune(self):
self.client.collections.delete_all()
self.client.collections.delete_all()
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⚠️ Potential issue

Remove duplicate collection deletion in prune method

The prune method calls self.client.collections.delete_all() twice, which is redundant and unnecessary. This could lead to unintended side effects or performance issues.

Apply this diff to fix the issue:

 async def prune(self):
     self.client.collections.delete_all()
-    self.client.collections.delete_all()

Committable suggestion skipped: line range outside the PR's diff.

Comment on lines 17 to 18
def read(self, chunk_size: int) -> str:
pass
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⚠️ Potential issue

Remove duplicate definition of read method

The read method is defined twice in the Document class, causing a redefinition error as indicated by the static analysis hint (F811). This can lead to unexpected behavior or runtime errors.

Apply this diff to fix the issue:

-    def read(self, chunk_size: int) -> str:
-        pass
🧰 Tools
🪛 Ruff (0.8.2)

17-17: Redefinition of unused read from line 15

(F811)

@@ -2,7 +2,7 @@


def convert_node_to_data_point(node_data: dict) -> DataPoint:
subclass = find_subclass_by_name(DataPoint, node_data["type"])
subclass = find_subclass_by_name(DataPoint, node_data._metadata["type"])
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⚠️ Potential issue

Ensure node_data has _metadata attribute with "type" key

The change accesses node_data._metadata["type"] instead of node_data["type"]. Verify that node_data is an object with an _metadata attribute containing the "type" key. If node_data is a dictionary, this change may cause an AttributeError.

Consider adding a check to ensure that _metadata exists and handle cases where node_data might not have this attribute.

Comment on lines 46 to 47
def get_embeddable_property_names(self, data_point):
return data_point._metadata["index_fields"] or []
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⚠️ Potential issue

Remove duplicate method definition.

The method get_embeddable_property_names is defined twice. The second definition at line 46 is redundant and should be removed.

-    def get_embeddable_property_names(self, data_point):
-        return data_point._metadata["index_fields"] or []
🧰 Tools
🪛 Ruff (0.8.2)

46-46: Redefinition of unused get_embeddable_property_names from line 44

(F811)

Comment on lines 82 to 83
asyncio.run(get_graph_from_model_test())
asyncio.run(get_graph_from_model_test())
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⚠️ Potential issue

Remove duplicate test execution.

The test function is being executed twice due to duplicate asyncio.run() calls. This could lead to misleading test results and increased test execution time.

 if __name__ == "__main__":
     asyncio.run(get_graph_from_model_test())
-    asyncio.run(get_graph_from_model_test())
📝 Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.

Suggested change
asyncio.run(get_graph_from_model_test())
asyncio.run(get_graph_from_model_test())
asyncio.run(get_graph_from_model_test())

Comment on lines 104 to 106
SourceCodeGraph.model_rebuild()
FunctionCall.model_rebuild()
SourceCodeGraph.model_rebuild()
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⚠️ Potential issue

Remove duplicate model_rebuild() calls

The model_rebuild() calls for FunctionCall and SourceCodeGraph are duplicated at lines 104-106. This is redundant and should be removed.

 FunctionCall.model_rebuild()
 SourceCodeGraph.model_rebuild()
-FunctionCall.model_rebuild()
-SourceCodeGraph.model_rebuild()

Committable suggestion skipped: line range outside the PR's diff.

Comment on lines 278 to 280
await client.delete_collection(collection.name)

await client.close()
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⚠️ Potential issue

Fix duplicate code and indentation in prune method

The code block is duplicated and incorrectly indented. This needs to be fixed to prevent runtime issues.

Apply this diff to fix the issues:

    async def prune(self):
        client = self.get_qdrant_client()

        response = await client.get_collections()

        for collection in response.collections:
            await client.delete_collection(collection.name)

        await client.close()
-            await client.delete_collection(collection.name)
-
-        await client.close()
📝 Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.

Suggested change
await client.delete_collection(collection.name)
await client.close()
await client.delete_collection(collection.name)
await client.close()
🧰 Tools
🪛 Ruff (0.8.2)

278-278: SyntaxError: Unexpected indentation

Comment on lines 341 to 344
async def prune(self):
await self.delete_graph()
print(f"Error deleting graph: {e}")

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⚠️ Potential issue

Fix duplicate prune method and syntax error

The prune method is duplicated and contains a syntax error with incomplete error handling.

Apply this diff to fix the issues:

    async def prune(self):
        await self.delete_graph()
-            print(f"Error deleting graph: {e}")
-
-    async def prune(self):
-        await self.delete_graph()
📝 Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.

Suggested change
async def prune(self):
await self.delete_graph()
print(f"Error deleting graph: {e}")
async def prune(self):
await self.delete_graph()
🧰 Tools
🪛 Ruff (0.8.2)

343-343: SyntaxError: Unexpected indentation

@alekszievr alekszievr force-pushed the feat/COG-651-add-type-to-datapoint-metadata branch from 02f1de7 to 076b3bf Compare December 12, 2024 13:56
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Actionable comments posted: 0

🧹 Outside diff range and nitpick comments (2)
cognee/infrastructure/databases/vector/pgvector/PGVectorAdapter.py (2)

Line range hint 191-193: Extract duplicate validation logic into a helper method

The validation logic for query parameters is duplicated in both get_distance_from_collection_elements and search methods.

Consider extracting the validation into a helper method:

+    def _validate_query_params(self, query_text: Optional[str], query_vector: Optional[List[float]]):
+        if query_text is None and query_vector is None:
+            raise InvalidValueError(message="One of query_text or query_vector must be provided!")
+
     async def get_distance_from_collection_elements(
             self,
             collection_name: str,
             query_text: str = None,
             query_vector: List[float] = None,
             with_vector: bool = False
     )-> List[ScoredResult]:
-        if query_text is None and query_vector is None:
-            raise ValueError("One of query_text or query_vector must be provided!")
+        self._validate_query_params(query_text, query_vector)

Also applies to: 258-260


Line range hint 216-217: Implement similarity score normalization

There are TODO comments about adding normalization of similarity scores in both search methods.

Would you like me to help implement the similarity score normalization? I can provide an implementation that normalizes the scores to a [0,1] range for better comparison.

Also applies to: 283-284

📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL
Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between 02f1de7 and 076b3bf.

📒 Files selected for processing (19)
  • cognee/infrastructure/databases/hybrid/falkordb/FalkorDBAdapter.py (2 hunks)
  • cognee/infrastructure/databases/vector/lancedb/LanceDBAdapter.py (1 hunks)
  • cognee/infrastructure/databases/vector/milvus/MilvusAdapter.py (2 hunks)
  • cognee/infrastructure/databases/vector/pgvector/PGVectorAdapter.py (1 hunks)
  • cognee/infrastructure/databases/vector/qdrant/QDrantAdapter.py (1 hunks)
  • cognee/infrastructure/databases/vector/weaviate_db/WeaviateAdapter.py (2 hunks)
  • cognee/infrastructure/engine/models/DataPoint.py (3 hunks)
  • cognee/modules/chunking/models/DocumentChunk.py (2 hunks)
  • cognee/modules/data/processing/document_types/Document.py (1 hunks)
  • cognee/modules/engine/models/Entity.py (1 hunks)
  • cognee/modules/engine/models/EntityType.py (1 hunks)
  • cognee/modules/graph/models/EdgeType.py (1 hunks)
  • cognee/modules/graph/utils/convert_node_to_data_point.py (1 hunks)
  • cognee/shared/CodeGraphEntities.py (1 hunks)
  • cognee/shared/SourceCodeGraph.py (2 hunks)
  • cognee/tasks/storage/index_data_points.py (3 hunks)
  • cognee/tasks/summarization/models.py (2 hunks)
  • cognee/tests/unit/interfaces/graph/get_graph_from_huge_model_test.py (2 hunks)
  • cognee/tests/unit/interfaces/graph/get_graph_from_model_test.py (2 hunks)
🚧 Files skipped from review as they are similar to previous changes (13)
  • cognee/modules/chunking/models/DocumentChunk.py
  • cognee/infrastructure/databases/vector/milvus/MilvusAdapter.py
  • cognee/modules/graph/utils/convert_node_to_data_point.py
  • cognee/modules/engine/models/Entity.py
  • cognee/modules/graph/models/EdgeType.py
  • cognee/tasks/summarization/models.py
  • cognee/tests/unit/interfaces/graph/get_graph_from_model_test.py
  • cognee/shared/CodeGraphEntities.py
  • cognee/tasks/storage/index_data_points.py
  • cognee/infrastructure/databases/vector/qdrant/QDrantAdapter.py
  • cognee/tests/unit/interfaces/graph/get_graph_from_huge_model_test.py
  • cognee/infrastructure/databases/vector/weaviate_db/WeaviateAdapter.py
  • cognee/infrastructure/databases/vector/lancedb/LanceDBAdapter.py
🧰 Additional context used
🪛 Ruff (0.8.2)
cognee/infrastructure/databases/hybrid/falkordb/FalkorDBAdapter.py

343-343: SyntaxError: Unexpected indentation

cognee/infrastructure/engine/models/DataPoint.py

46-46: Redefinition of unused get_embeddable_property_names from line 44

(F811)

cognee/modules/data/processing/document_types/Document.py

17-17: Redefinition of unused read from line 15

(F811)

🔇 Additional comments (13)
cognee/modules/data/processing/document_types/Document.py (2)

11-13: LGTM: Metadata type addition aligns with PR objective

The addition of _metadata with type "Document" follows the consistent pattern being implemented across the codebase.


17-18: ⚠️ Potential issue

Remove duplicate definition of read method

The read method is defined twice in the Document class, causing a redefinition error.

-    def read(self, chunk_size: int) -> str:
-        pass
🧰 Tools
🪛 Ruff (0.8.2)

17-17: Redefinition of unused read from line 15

(F811)

cognee/infrastructure/engine/models/DataPoint.py (2)

18-19: LGTM: Type metadata addition preserves existing functionality

The addition of "type": "DataPoint" to _metadata while maintaining the existing "index_fields" key ensures backward compatibility.


46-47: ⚠️ Potential issue

Remove duplicate method definition

The method get_embeddable_property_names is defined twice. The second definition is redundant.

-    def get_embeddable_property_names(self, data_point):
-        return data_point._metadata["index_fields"] or []
🧰 Tools
🪛 Ruff (0.8.2)

46-46: Redefinition of unused get_embeddable_property_names from line 44

(F811)

cognee/shared/SourceCodeGraph.py (3)

15-15: LGTM: Consistent type metadata implementation across classes

The addition of _metadata with appropriate type values is consistently implemented across all classes in the hierarchy.

Also applies to: 24-25, 36-36, 48-48, 60-60, 69-70, 79-80, 96-98


105-106: ⚠️ Potential issue

Remove duplicate model_rebuild() calls

The model_rebuild() calls for FunctionCall and SourceCodeGraph are duplicated.

-FunctionCall.model_rebuild()
-SourceCodeGraph.model_rebuild()

Line range hint 82-95: Verify type metadata impact on class relationships

The SourceCodeGraph class contains a complex hierarchy of node types. Please verify that the transition from literal types to metadata types doesn't affect type checking or runtime behavior.

✅ Verification successful

Let me gather more information about the type usage with corrected commands.


Based on the comprehensive results, I can now provide a final response:

No type-related issues found with the SourceCodeGraph node types transition

The codebase analysis shows that the type system is well-structured and safe:

  • All node types (Class, ClassInstance, Function, etc.) are properly defined as DataPoint subclasses with consistent metadata
  • Type imports and annotations are correctly used throughout the codebase
  • No direct type string comparisons are used for these node types
  • Type checking is handled through proper Pydantic model validation (model_rebuild() calls are present)
  • The Union type in the nodes list is correctly used with all possible node types
🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Verify usage of SourceCodeGraph nodes and their types

# Check for direct type comparisons that might break
rg -A 2 "type\s*[=!]=\s*['\"]" --type py

# Check for isinstance checks that might need updates
rg -A 2 "isinstance.*\b(Class|ClassInstance|Function|FunctionCall|Variable|Operator|Expression)\b" --type py

# Look for type annotations using these classes
ast-grep --pattern 'List[$_]' --pattern 'Union[$_]'

Length of output: 1747


Script:

#!/bin/bash
# Search for type annotations and usage of node types separately
ast-grep --pattern 'List[Union[$_]]'

# Look for imports and usage of these types
rg -A 2 "\b(Class|ClassInstance|Function|FunctionCall|Variable|Operator|Expression)\b" --type py

# Check type checking related imports
rg "from typing import|import typing" --type py

# Look for any validation or type checking logic
rg "isinstance|issubclass|type\(" --type py

Length of output: 25357

cognee/infrastructure/databases/vector/pgvector/PGVectorAdapter.py (2)

26-27: LGTM: Metadata type addition aligns with PR objectives

The addition of "type": "IndexSchema" to the metadata dictionary enhances type safety and improves data point identification.


Line range hint 155-161: LGTM: Proper error handling implementation

The error handling in the get_table method is well-implemented, using the appropriate custom exception type and providing a clear error message.

cognee/infrastructure/databases/hybrid/falkordb/FalkorDBAdapter.py (1)

341-344: ⚠️ Potential issue

Fix duplicate prune method and syntax error

The prune method is duplicated and contains a syntax error with an indented print statement that doesn't belong to any try-except block.

Apply this diff to fix the issues:

    async def prune(self):
        await self.delete_graph()
-            print(f"Error deleting graph: {e}")
-
-    async def prune(self):
-        await self.delete_graph()
🧰 Tools
🪛 Ruff (0.8.2)

343-343: SyntaxError: Unexpected indentation

cognee/modules/engine/models/EntityType.py (3)

1-1: LGTM! Clean import and class definition.

The class definition and inheritance structure are well-organized and follow good practices.

Also applies to: 3-4


5-7: LGTM! Clear attribute definitions.

The string type annotations for name and description fields are appropriate and well-defined.


8-12: Verify impact of moving type to metadata.

The addition of type information to metadata aligns with the standardization effort. However, since the type attribute was removed, we should verify that all consumers of EntityType have been updated to access type information from metadata instead.

✅ Verification successful

Moving type to metadata appears safe and consistent with codebase patterns

Based on the search results, the change appears safe for the following reasons:

  • The type information is consistently accessed through metadata across the codebase, as seen in convert_node_to_data_point.py using _metadata["type"]
  • No direct access to a .type attribute on EntityType instances was found
  • The only type-related references found are either:
    • Type hints (e.g., is_type: EntityType)
    • Instance creation (e.g., type_node = EntityType(...))
    • Unrelated type checks in other contexts
🏁 Scripts executed

The following scripts were executed for the analysis:

Script:

#!/bin/bash
# Description: Search for direct references to EntityType.type to ensure the attribute removal won't break existing code

# Search for any remaining references to the removed type attribute
echo "Searching for potential broken references to EntityType.type..."
rg -l "EntityType\.type" 

# Search for patterns that might need updating to use metadata instead
echo "Searching for patterns that might need updating to use metadata..."
ast-grep --pattern 'EntityType().$type'

# Look for similar patterns in test files
echo "Checking test files for potential issues..."
fd -e py -e pytest test | xargs rg "EntityType.*\.type"

Length of output: 503


Script:

#!/bin/bash
# Let's try a broader search to catch any references to EntityType and analyze the context

# Search for files containing EntityType references with context
echo "Searching for EntityType usage patterns..."
rg -A 3 "EntityType" 

# Look specifically for metadata access patterns
echo "Searching for metadata access patterns..."
rg "_metadata\[.?[\"']type[\"'].?\]" 

# Search for type-related method calls on EntityType instances
echo "Searching for type-related method calls..."
rg "\.type\s*[=\(\)]"

Length of output: 4509

@alekszievr alekszievr force-pushed the feat/COG-651-add-type-to-datapoint-metadata branch from 076b3bf to 47f5da4 Compare December 12, 2024 14:01
@alekszievr alekszievr closed this Dec 12, 2024
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