Merge pull request #329 from RaulPPelaez/update_env

Update environment file

docs/source/installation.rst

@@ -54,11 +54,9 @@ It is recommended to install the same version as the one used by torch.
 
 .. code-block:: shell
 
-   conda install -c conda-forge cuda-nvcc cuda-libraries-dev cuda-version "gxx<12" pytorch=*=*cuda*
+   conda install -c conda-forge cuda-nvcc cuda-libraries-dev cuda-version gxx pytorch=*=*cuda*
+
 
-   
-.. warning:: gxx<12 is required due to a `bug in GCC+CUDA12 <https://github.com/pybind/pybind11/issues/4606>`_ that prevents pybind11 from compiling correctly
-
 
 * CUDA<12  
 

environment.yml

@@ -6,14 +6,14 @@ dependencies:
   - matplotlib-base
   - nnpops
   - pip
-  - pytorch<2.2
-  - pytorch_geometric<2.5
-  - lightning<2.2
+  - pytorch
+  - pytorch_geometric
+  - lightning
   - pydantic
   - torchmetrics
   - tqdm
   # Dev tools
   - flake8
   - pytest
   - psutil
-  - gxx<12
+  - gxx

tests/test_neighbors.py

@@ -669,6 +669,10 @@ def test_per_batch_box(device, strategy, n_batches, use_forward):
 @pytest.mark.parametrize("loop", [True, False])
 @pytest.mark.parametrize("include_transpose", [True, False])
 def test_torch_compile(device, dtype, loop, include_transpose):
+    import sys
+
+    if sys.version_info >= (3, 12):
+        pytest.skip("Not available in this version")
     if torch.__version__ < "2.0.0":
         pytest.skip("Not available in this version")
     if device == "cuda" and not torch.cuda.is_available():

torchmdnet/module.py

@@ -25,7 +25,7 @@ def __init__(self, dtype=torch.float64):
         super(FloatCastDatasetWrapper, self).__init__()
         self._dtype = dtype
 
-    def forward(self, data):
+    def __call__(self, data):
         for key, value in data:
             if torch.is_tensor(value) and torch.is_floating_point(value):
                 setattr(data, key, value.to(self._dtype))
@@ -41,7 +41,7 @@ def __init__(self, atomref):
         super(EnergyRefRemover, self).__init__()
         self._atomref = atomref
 
-    def forward(self, data):
+    def __call__(self, data):
         self._atomref = self._atomref.to(data.z.device).type(data.y.dtype)
         if "y" in data:
             data.y.index_add_(0, data.batch, -self._atomref[data.z])