Added precomiled vignette workflow

traitecoevo · Nov 29, 2023 · c3f981e · c3f981e
1 parent 7a6f044
commit c3f981e
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Showing 23 changed files with 1,497 additions and 930 deletions.
diff --git a/R/stanmodels.R b/R/stanmodels.R
@@ -1,7 +1,7 @@
 # Generated by rstantools.  Do not edit by hand.
 
 # names of stan models
-stanmodels <- c("model1a", "model1b", "model1c", "model1d", "model1e", "model2a", "model2a_h1", "model2a_h2", "model2a_h3", "model2b")
+stanmodels <- c("model1a", "model1b", "model1c", "model1d", "model1e", "model2a", "model2b")
 
 # load each stan module
 Rcpp::loadModule("stan_fit4model1a_mod", what = TRUE)
@@ -10,9 +10,6 @@ Rcpp::loadModule("stan_fit4model1c_mod", what = TRUE)
 Rcpp::loadModule("stan_fit4model1d_mod", what = TRUE)
 Rcpp::loadModule("stan_fit4model1e_mod", what = TRUE)
 Rcpp::loadModule("stan_fit4model2a_mod", what = TRUE)
-Rcpp::loadModule("stan_fit4model2a_h1_mod", what = TRUE)
-Rcpp::loadModule("stan_fit4model2a_h2_mod", what = TRUE)
-Rcpp::loadModule("stan_fit4model2a_h3_mod", what = TRUE)
 Rcpp::loadModule("stan_fit4model2b_mod", what = TRUE)
 
 # instantiate each stanmodel object

diff --git a/inst/stan/model2a_h1.stan b/inst/stan/model2a_h1.stan
diff --git a/inst/stan/model2a_h2.stan b/inst/stan/model2a_h2.stan
diff --git a/inst/stan/model2a_h3.stan b/inst/stan/model2a_h3.stan
diff --git a/man/figures/README-pressure-1.png b/man/figures/README-pressure-1.png
diff --git a/src/RcppExports.cpp b/src/RcppExports.cpp
@@ -18,9 +18,6 @@ RcppExport SEXP _rcpp_module_boot_stan_fit4model1c_mod();
 RcppExport SEXP _rcpp_module_boot_stan_fit4model1d_mod();
 RcppExport SEXP _rcpp_module_boot_stan_fit4model1e_mod();
 RcppExport SEXP _rcpp_module_boot_stan_fit4model2a_mod();
-RcppExport SEXP _rcpp_module_boot_stan_fit4model2a_h1_mod();
-RcppExport SEXP _rcpp_module_boot_stan_fit4model2a_h2_mod();
-RcppExport SEXP _rcpp_module_boot_stan_fit4model2a_h3_mod();
 RcppExport SEXP _rcpp_module_boot_stan_fit4model2b_mod();
 
 static const R_CallMethodDef CallEntries[] = {
@@ -30,9 +27,6 @@ static const R_CallMethodDef CallEntries[] = {
     {"_rcpp_module_boot_stan_fit4model1d_mod", (DL_FUNC) &_rcpp_module_boot_stan_fit4model1d_mod, 0},
     {"_rcpp_module_boot_stan_fit4model1e_mod", (DL_FUNC) &_rcpp_module_boot_stan_fit4model1e_mod, 0},
     {"_rcpp_module_boot_stan_fit4model2a_mod", (DL_FUNC) &_rcpp_module_boot_stan_fit4model2a_mod, 0},
-    {"_rcpp_module_boot_stan_fit4model2a_h1_mod", (DL_FUNC) &_rcpp_module_boot_stan_fit4model2a_h1_mod, 0},
-    {"_rcpp_module_boot_stan_fit4model2a_h2_mod", (DL_FUNC) &_rcpp_module_boot_stan_fit4model2a_h2_mod, 0},
-    {"_rcpp_module_boot_stan_fit4model2a_h3_mod", (DL_FUNC) &_rcpp_module_boot_stan_fit4model2a_h3_mod, 0},
     {"_rcpp_module_boot_stan_fit4model2b_mod", (DL_FUNC) &_rcpp_module_boot_stan_fit4model2b_mod, 0},
     {NULL, NULL, 0}
 };