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Parabolic mortars for P4estMesh#1662

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jlchan wants to merge 92 commits intotrixi-framework:maintrixi-framework/Trixi.jl:mainfrom jlchan:jc/amr_parabolic_p4estjlchan/Trixi.jl:jc/amr_parabolic_p4estCopy head branch name to clipboard

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Commits on Aug 14, 2023

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• test coarsen

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• remove redundancy

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Commits on Aug 15, 2023

• Merge branch 'main' into Parabolic_AMR_1D

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Commits on Aug 16, 2023

• Merge branch 'main' into Parabolic_AMR_1D

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Commits on Aug 18, 2023

• Remove support for passive terms

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• expand resize

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• Merge branch 'Parabolic_AMR_1D' of github.com:DanielDoehring/Trixi.jl into Parabolic_AMR_1D

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Commits on Aug 19, 2023

• Merge branch 'main' into Parabolic_AMR_1D

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Commits on Aug 20, 2023

• Avoid code duplication

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• Merge branch 'Parabolic_AMR_1D' of github.com:DanielDoehring/Trixi.jl into Parabolic_AMR_1D

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Commits on Aug 22, 2023

• Update src/callbacks_step/amr_dg1d.jl

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• Merge branch 'main' into Parabolic_AMR_1D

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Commits on Aug 28, 2023

• Try to increase coverage

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• Merge branch 'Parabolic_AMR_1D' of github.com:DanielDoehring/Trixi.jl into Parabolic_AMR_1D

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Commits on Aug 29, 2023

• Slightly more expressive names

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Commits on Aug 31, 2023

• Merge branch 'main' into Parabolic_AMR_1D

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Commits on Sep 1, 2023

• Apply suggestions from code review

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• Merge branch 'main' into Parabolic_AMR_1D

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Commits on Sep 6, 2023

• Merge branch 'main' into Parabolic_AMR_1D

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Commits on Sep 7, 2023

• Merge branch 'main' into Parabolic_AMR_1D

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Commits on Sep 11, 2023

• add specifier for 1d

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• Structs for resizing parabolic helpers

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• check if mortars are present

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• reuse reinitialize_containers!

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• resize calls for parabolic helpers

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• update analysis callbacks

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• Velocities for compr euler

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• Init container

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• correct copy-paste error

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• resize each dim

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• add dispatch

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• Add AMR for shear layer

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• USe only amr shear layer

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• first steps towards p4est parabolic amr

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• Add tests

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• remove redundant line

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• platform independent tests

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Commits on Sep 12, 2023

• Merge branch 'main' into AMR_Parabolic_2D3D_Tree

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• No need for different flux_viscous comps after adding container_viscous to p4est

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• Merge branch 'AMR_Parabolic_2D3D_Tree' of github.com:DanielDoehring/Trixi.jl into AMR_Parabolic_2D3D_Tree

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• Laplace 3d

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Commits on Sep 15, 2023

• Merge branch 'main' into AMR_Parabolic_2D3D_Tree

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Commits on Sep 18, 2023

• Merge branch 'main' into AMR_Parabolic_2D3D_Tree

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Commits on Sep 20, 2023

• Merge branch 'main' into AMR_Parabolic_2D3D_Tree

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• Merge branch 'main' into AMR_Parabolic_2D3D_Tree

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• Longer times to allow converage to hit coarsen!

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• Merge branch 'AMR_Parabolic_2D3D_Tree' of github.com:DanielDoehring/Trixi.jl into AMR_Parabolic_2D3D_Tree

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• Increase testing of Laplace 3D

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• Add tests for velocities

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• Merge branch 'main' into AMR_Parabolic_2D3D_Tree

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Commits on Sep 22, 2023

• Merge branch 'main' into AMR_Parabolic_2D3D_Tree

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• Merge branch 'main' into AMR_Parabolic_2D3D_Tree

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Commits on Oct 4, 2023

• Merge branch 'main' into AMR_Parabolic_2D3D_Tree

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Commits on Oct 5, 2023

• remove comment

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• Merge branch 'AMR_Parabolic_2D3D_Tree' of github.com:DanielDoehring/Trixi.jl into AMR_Parabolic_2D3D_Tree

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• Merge branch 'main' into AMR_Parabolic_2D3D_Tree

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Commits on Oct 6, 2023

• Merge remote-tracking branch 'DanielDoehring/AMR_Parabolic_2D3D_Tree' into jc/amr_parabolic_p4est

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• add elixir for amr testing

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• adding commented out mortar routines in 2D

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• Adding Mortar to 2d dg parabolic term

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Commits on Oct 7, 2023

• remove testing snippet

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• fix comments

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• add more arguments for dispatch

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• add some temporary todo notes

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• some updates for AP and KS

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• specialize mortar_fluxes_to_elements

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• BUGFIX: apply_jacobian_parabolic! was incorrect for P4estMesh

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• fixed rhs_parabolic! for mortars

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• more changes to elixir

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• indexing bug

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• comments

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Commits on Oct 9, 2023

• Merge branch 'main' into jc/amr_parabolic_p4est

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• Adding the example for nonperiodic BCs with amr

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• hopefully this fixes AMR boundaries for parabolic terms

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• add elixir

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• Example with non periodic bopundary conditions

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• remove cruft

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• Merge remote-tracking branch 'jlchan/jc/amr_parabolic_p4est' into jc/amr_parabolic_p4est

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Commits on Oct 12, 2023

• Merge branch 'main' into jc/amr_parabolic_p4est

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