Process completed with exit code 1.

Your workflow is using a version of actions/cache that is scheduled for deprecation, actions/cache@v2. Please update your workflow to use the latest version of actions/cache to avoid interruptions. Learn more: https://github.blog/changelog/2024-09-16-notice-of-upcoming-deprecations-and-changes-in-github-actions-services/

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, actions/cache@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/

The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/

The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/

replacing previous import ‘Matrix::unname’ by ‘S4Vectors::unname’ when loading ‘dandelionR’

replacing previous import ‘Matrix::expand’ by ‘S4Vectors::expand’ when loading ‘dandelionR’

replacing previous import ‘Seurat::components’ by ‘igraph::components’ when loading ‘dandelionR’

replacing previous import ‘BiocGenerics::normalize’ by ‘igraph::normalize’ when loading ‘dandelionR’

replacing previous import ‘BiocGenerics::path’ by ‘igraph::path’ when loading ‘dandelionR’

replacing previous import ‘S4Vectors::union’ by ‘igraph::union’ when loading ‘dandelionR’

replacing previous import ‘igraph::graph’ by ‘miloR::graph’ when loading ‘dandelionR’

replacing previous import ‘igraph::simplify’ by ‘purrr::simplify’ when loading ‘dandelionR’

replacing previous import ‘igraph::compose’ by ‘purrr::compose’ when loading ‘dandelionR’