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replace pqcrypto-kyber with pqcrypto-mlkem and update dependencies #17844

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Run time

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Job	Run time
build-desktop	5m 42s
build-webapp	3m 38s
build-calendar	4m 7s
lint	1m 23s
test-browser	5m 3s
test-node	6m 54s
	26m 47s